Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05804 ATGAGATTTACTTACATAATGCATGATTGTGGTATGGAGGAGGATGAGATTCAGGCACAGGCGTGTAAATTCCCTAGAGTTGGAAATGGGAGGAATGAGTCTAACAAGATAGGTCCAAGAGGAGGAGGGAATGAGCAATACCCAGATGAGGAAGAAGATGGAGAGCTCAGAAGAAGAGGTGGTGGAGGAGGAAGTGATGTTAGCACAAACAGGTTCCATGGTTGGCACAACCATTCTTCAAGAATCATTAGAGTGTCTAGAGCATCTGGGGGTAAAGATAGGCACAGCAAGGTCATGACTTCAAAAGGTTTAAGAGACAGAAGGGTTAGGCTTTCTGTGACCACAGCTATTCAGTTCTATGATCTTCAAGATCGTTTGGGTTATGACCAACCAAGTAAAGCTGTGGAGTGGCTAATCAAATCAGCTTCAGATGCCATTGCAGAACTACCTTCCTTACCTGATACCCCAAAGCAACCAAGTGATGAGAAAAGGCCAAGTTTGGGCACTGAGCAAGGCTTTGATTCAGCTGATGCAGAGCTAGAAGGTGATACCAACTATCACCAGAACCAAAGCCAGAACCTTTCTTTGTCTAAATCTGCTTGTAGCAGCACTTCAGAGACAAGCAAAGGCTCTGGCTTGTCACTCTCTAGGTCTGACATTCGTGTGAACCGTGTCAAAGCAAGAGAGAGGGCAAGGGAAAGAGCAGCCAAAGAGAAGGAGAAAGAAAAGGAGAAGGAGAATGACTCTCACATTGCTCATCACCATCACCACCACCACCACCACAATGTGAACTCCATTTCTCAAACAGCTTCTTTCACTGAGCTACTCACAGGTGGAATCAACAATGCAGTTCCCACAACAACAAGTCCAAGAGGTTCAGTTCATCAAAACCATGGTGTTGATGAGCCTAATCTGTTCAATAAACCAGCTACTAGACATCAACAATGGTGTTCATCAGCAGCACCAATGGACTACTTCACCTCAGGGCTTCTTGGACCATCCTCTTCAAGAACCCATCAACATCAGCATCACCATCAGCAACAACAACAACATCAACCTTCTTCAGGGTTCTCAATATCACAAATCCAATTGGGACATTCCCTTCCTGAGGCCATGTCAGTTTCACTACCATTCAGTGAAAACCATCACTCATCATCATCAGATCAACTACAGCATCATTTCTCATTCATCCCTGATCATCTCATGCCAGCTGTGGTTACTTCTTCTCAGCCAAACGGGAACGATTACAATCTCAACTTCACCATATCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCACTATTGCCTCATCTGCAGAGGTTTTCACCTATAGACGGATCCACTGTACCTTTCTTCATTGGAGCTGCTGCTCCTGCTTCAGCTTCAGCTTCAGCTACAACTCCTACCATGGAGAATAACAACAACAATCATCACCACCATCAATTTTCATCTGTTTTTGATGGCAGCCGCTTGCAGCTTTACTATGGCGACGGATGCCGCCATTCAGATCAGAAGGGGAAAACCAAAAACTAA 1554 0.4517 MRFTYIMHDCGMEEDEIQAQACKFPRVGNGRNESNKIGPRGGGNEQYPDEEEDGELRRRGGGGGSDVSTNRFHGWHNHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAIAELPSLPDTPKQPSDEKRPSLGTEQGFDSADAELEGDTNYHQNQSQNLSLSKSACSSTSETSKGSGLSLSRSDIRVNRVKARERARERAAKEKEKEKEKENDSHIAHHHHHHHHHNVNSISQTASFTELLTGGINNAVPTTTSPRGSVHQNHGVDEPNLFNKPATRHQQWCSSAAPMDYFTSGLLGPSSSRTHQHQHHHQQQQQHQPSSGFSISQIQLGHSLPEAMSVSLPFSENHHSSSSDQLQHHFSFIPDHLMPAVVTSSQPNGNDYNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPIDGSTVPFFIGAAAPASASASATTPTMENNNNNHHHHQFSSVFDGSRLQLYYGDGCRHSDQKGKTKN. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05804 517 MobiDBLite consensus disorder prediction 148 173 - -
Seca11g05804 517 MobiDBLite consensus disorder prediction 186 266 - -
Seca11g05804 517 Pfam TCP family transcription factor 90 241 IPR017887 -
Seca11g05804 517 ProSiteProfiles TCP domain profile. 91 149 IPR017887 -
Seca11g05804 517 MobiDBLite consensus disorder prediction 328 357 - -
Seca11g05804 517 ProSiteProfiles R domain profile. 221 239 IPR017888 -
Seca11g05804 517 MobiDBLite consensus disorder prediction 281 295 - -
Seca11g05804 517 MobiDBLite consensus disorder prediction 45 60 - -
Seca11g05804 517 MobiDBLite consensus disorder prediction 186 218 - -
Seca11g05804 517 Coils Coil 225 248 - -
Seca11g05804 517 MobiDBLite consensus disorder prediction 281 313 - -
Seca11g05804 517 MobiDBLite consensus disorder prediction 26 73 - -
Seca11g05804 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 63 393 IPR005333 GO:0003700
Seca11g05804 517 MobiDBLite consensus disorder prediction 221 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05804 Seca-Chr11 158099655 158103125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05804 70 517 TCP Transcription Factor Family AT4G18390 42.138 4.43e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g05804 TCP 9.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05804 - - lang:109362619 496.508