Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05793 ATGAGGAGGAGGAGGAATTGCAACTTAGAACTTCAACTTTTCCCCCCTTCCCATTCCGATCTTCGTCCCATCATGGAAGAAGAAGGGGAAGCTAGTGAAAGCCCACGACAACAAGGCCATCAGCAGCCGTTAACCATTTTCTATGATGGCAAGATTTGCGTTTCTGATGCCACAGAGCTTCAGCAGGCTAGATCAATTTTAATGCTTGCGAATAAAGAGATGGAGGAAAAAGTGAAGACACCAACAAGTGGGTCAGAGCCATCATCACCAATGCCTGTGTCACATTACAATGTGTATAGCCCTGGTAGTGGTCTTTCCATGAAAAAATCGTTGCAGAGGTTTCTTCAGAAGAGGAAGAATCGGGTCCAAGAAGCATCCCCATACCAAATGAGCAAAATCAATTGA 405 0.4494 MRRRRNCNLELQLFPPSHSDLRPIMEEEGEASESPRQQGHQQPLTIFYDGKICVSDATELQQARSILMLANKEMEEKVKTPTSGSEPSSPMPVSHYNVYSPGSGLSMKKSLQRFLQKRKNRVQEASPYQMSKIN. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05793 134 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g05793 134 Pfam Jas motif 108 129 IPR018467 -
Seca11g05793 134 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 131 IPR040390 -
Seca11g05793 134 MobiDBLite consensus disorder prediction 81 101 - -
Seca11g05793 134 Coils Coil 57 77 - -
Seca11g05793 134 MobiDBLite consensus disorder prediction 115 134 - -
Seca11g05793 134 SMART tify_2 37 72 IPR010399 -
Seca11g05793 134 MobiDBLite consensus disorder prediction 77 101 - -
Seca11g05793 134 ProSiteProfiles Tify domain profile. 37 72 IPR010399 -
Seca11g05793 134 Pfam tify domain 41 71 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05793 Seca-Chr11 157972209 157974674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05793 1 129 Tify Gene Family AT1G30135 44.776 5.20e-28 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca11g05793 tify 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05793 - - gmx:100305565 171.785