Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05768 ATGGAAAAATCGAAAACCTTTCTCCACAGTCTTGTGAAACACTTCAAATCCGGTTCCAGTAAAGAGAGAAACAATGAAGCTGACATTCACAGAATGGCTGCACAGGAGCAGAAGATCTTTGCCTATGAAACCTTGATTGCTGCCACCAAGAATTTTAATGCTATTCATAAGCTAGGTGAAGGAGGTTTTGGACCTGTCTACAAGGGGAGGCTGAATGATGGTAGAGAAATTGCAGTGAAGAAGTTATCAGTCACCTCAAAGCAAGGGAAGAAGGAGTTCTTGAATGAGGCCAAGTTGCTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGTTGGGATATTGTGTCCATGGAGCAGAAAAGCTACTTGTCTATGAGTATGTGCCTCATGAGAGCCTTGACAAGCTTCTATTCAAATCTCATAAGAGAGAGGAGCTTGATTGGAAACGTAGGTTTGGCATAATCACAGGTGTGGCAAAGGGGTTACTTTATCTACACGAAGACTCGCATCATTGCATAATCCATCGTGACATCAAGGCAAGTAACATATTGCTTGATGACAAATGGACGCCCAAGATTGCAGACTTTGGCATGGCTCGTCTCTTCCCTGAAGATCAAAGCCAGGTCAATACACGTGTGGCTGGAACCAATGGATACATGGCTCCGGAATACATGATGCATGGAAACCTATCTGTGAAGGCAGACGTGTTTAGTTATGGCGTTTTGGTATTGGAGTTGATTACCGGTCAACGAAACAACAACTTTAATTTGGACGTTGATGCCATGAATCTCCTTGATTGGGCATACAAGCAGTACAAGAAGGGGAAGAGCTTAGAGATTGTGGATTCAACATTAGTATCTACAATGGAAGCAGAACAAGTAGGAATGTGCATTCAGCTAGCTCTGCTATGCACACAAGGTGATCCACTCCTACGTCCAACCATGAGGCGTGTGGTAGTGATGCTTTCAAGGAAAGCAGGGCACAATCACATGGAAGAACCAACAAGACCAGGAATTCCTGGCACTAGATACAGAAGGCCTCGAAGGCACTCTGCTTTGTCTTCCACAGTTGGTACCTCTGGTGCCTCTGATTCACACACTTCTGATTCTAGCAACAACTATACCACTGTTACTACTACTGCAACTGCAACAGCAACAGCAACAGCAACAAGCTCAGCTACTCCAGATACAGACCGAAAAGGGAAACGTCCACTGCAGGGTTAG 1224 0.4485 MEKSKTFLHSLVKHFKSGSSKERNNEADIHRMAAQEQKIFAYETLIAATKNFNAIHKLGEGGFGPVYKGRLNDGREIAVKKLSVTSKQGKKEFLNEAKLLARVQHRNVVNLLGYCVHGAEKLLVYEYVPHESLDKLLFKSHKREELDWKRRFGIITGVAKGLLYLHEDSHHCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGNLSVKADVFSYGVLVLELITGQRNNNFNLDVDAMNLLDWAYKQYKKGKSLEIVDSTLVSTMEAEQVGMCIQLALLCTQGDPLLRPTMRRVVVMLSRKAGHNHMEEPTRPGIPGTRYRRPRRHSALSSTVGTSGASDSHTSDSSNNYTTVTTTATATATATATSSATPDTDRKGKRPLQG. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05768 407 MobiDBLite consensus disorder prediction 327 407 - -
Seca11g05768 407 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 379 - -
Seca11g05768 407 Pfam Protein tyrosine and serine/threonine kinase 54 321 IPR001245 GO:0004672|GO:0006468
Seca11g05768 407 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Seca11g05768 407 FunFam Cysteine-rich receptor-like protein kinase 10 129 336 - -
Seca11g05768 407 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05768 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Seca11g05768 407 MobiDBLite consensus disorder prediction 352 395 - -
Seca11g05768 407 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05768 407 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Seca11g05768 407 CDD STKc_IRAK 58 324 - -
Seca11g05768 407 Gene3D Phosphorylase Kinase; domain 1 13 127 - -
Seca11g05768 407 Gene3D Transferase(Phosphotransferase) domain 1 128 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05768 Seca-Chr11 157575743 157581680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05768 40 339 Receptor kinase-like Gene Family AT4G11530 51.987 3.16e-109 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca11g05768 PK_Tyr_Ser-Thr 9.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05768 - - gmx:100795769 668.692