Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05757 ATGATGACTCCAAACTTGAACTTAGAACCTGAAAACCATTCAGAAGGCAGCAGCCAAGTGGCTTCCAATATATCCTTGCAAGAAGCATCCCATGACCTTACCAGGGACAGCACAACCACTTCTTCCTGTCTTACAAATCTTACAAAGGCTGAAGGTGATCCAGGTTCTCTTACCCTTGACTTGACACTCAACTTTATTTCCAGTGATGGTGAGTTGAAGGGTTCAAGTGATGCGAGTAGTGAAGTGGGAGCTGAAGCTGCTGCTGATGCTTCAGCATCAGCATCAGCAACTCCCAGGGTTTTCTCATGTAATTATTGCAGGCGGAAGTTCTTTAGCTCACAGGCATTAGGAGGTCATCAGAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGCGCAATGCGAATGGGTATGTTCACCGAGAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTATTGAAGCTCATGCTGCAATGCACCGAAGACAAATGCCATCATCAATGAGGGTTCCTGATATGAGAGCTGGTGCAAAATTTGAGAAAAACCATTTTGGATCAGTAGTTTTCATGGAAGATGATGTAGGTTTCTTTTGGCCTGGCAGTTTCAGACAGGTAGATCAGGGAACTGGTGTTAATCTAGGACATCCTCAAACTTCAAATGGTAGTCTTGCTCCAAAGGCACCTCCTCCACCACCACCAACATCTACATCCCCAGATCTCACATTGAAGCTATAA 759 0.4519 MMTPNLNLEPENHSEGSSQVASNISLQEASHDLTRDSTTTSSCLTNLTKAEGDPGSLTLDLTLNFISSDGELKGSSDASSEVGAEAAADASASASATPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHAAMHRRQMPSSMRVPDMRAGAKFEKNHFGSVVFMEDDVGFFWPGSFRQVDQGTGVNLGHPQTSNGSLAPKAPPPPPPTSTSPDLTLKL. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05757 252 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Seca11g05757 252 MobiDBLite consensus disorder prediction 1 21 - -
Seca11g05757 252 FunFam Zinc finger protein 2 78 147 - -
Seca11g05757 252 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Seca11g05757 252 Gene3D Classic Zinc Finger 78 147 - -
Seca11g05757 252 MobiDBLite consensus disorder prediction 216 230 - -
Seca11g05757 252 MobiDBLite consensus disorder prediction 216 252 - -
Seca11g05757 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 27 173 IPR044246 GO:0009788
Seca11g05757 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Seca11g05757 252 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05757 Seca-Chr11 157461297 157465209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05757 95 252 C2H2 Transcription Factor Family AT1G66140 44.624 5.26e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g05757 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05757 - - gmx:100775305 345.51