LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05755	ATGATTGGAGGTAAAGATCTTCGTAATGGTGTTGTTGACTCTGAAGGTGAGAACTCTAGGAGCAAGCTGTCAAGGCCCAATTTTGAGCCTAGAAAGGAGTACCCAGATGAGAAACTGGGTTACCCAGATAAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGGTGGGTGGTGGTGGTGGTGGTGTTGATGGGGTTCTTCAGTCAAAGTCCACCAAGGTTGTTGTTGGCAGCTCAGGGTTGCAAGAGCTGACCCTCAGCTACCTCTGTGATAACTCAAAATTGGGTCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGCTGAATTCCTTTGAAAAAATGAGCCACAAAGGTAAAGAGGTTGTTGTCGTTTCTGAGAATTCAAATCATGATGGAAAATGGGTAGAGAGAGATTTCCTGAGCTTGAGTGAAACCAGAGAGGATTCTTCAAAGCGATCGCTTGAAGAAGATGTTGAAAGGGAGAGTCATAGCCATAGGGGGGACAAGAAGCCAAAACTGGAAACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACTGCTTCAAACGCCTTACAAAATGGTGATCAACCAGTTAGGACTAAACCTAACAGGCCATCAACTACTCACACTTCATATTCAAATGATTACACAGCAGCTTCTTTGTCTTACTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTCACCCGCAATTCAACTGATTTTGATTATTCAGTGAGCAAAGATGACCAAATTTGGAATTGTGGAGAAGGGACTAATGGTTCTGTTCATAGTAGATTCAAGCCAATTGGAGATGGGGTTGGTTTGTCCAATCATGGTGGTGGTGGTGGTCTTAGTTCCTTCATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAATCATTCATTTTTCCCTTCAGAATTGCCTGCAAGACCAAGATTTGAAGCTGCTCAGTCAGGGGACTCAAGGGGAAGGAATTCTGAGAATCTGAGAGCCTTGGAAGGGTTAGATGGTGGGAAGATAAGGAAGCCTTCTAGACCAGAGAGAATTGTTAGGGAAATTGTTTCAGAGTCTATCCCTATCATGGCATTGACAATTCAGGAGCTTACTGATGAAGTCATAGCATCAAGTAAGGAATACTTGAAGAATCTCATTGAGAAGCCTGAGAAGAAAGAGGAATTGGTCAGCCTCCAAAGCCGGCTTGAGAGAAGATCTGATCTTACCAAAGAGACTCTTTCAAAGTGCAATAAGGTGCAATTAGAGATTTTATTAGCTACCAAGATGGGGCTGACAAGCTTCTTATCTGGCAAAGTTAATTTATCTGAGATGTTAGAGATTTTCTTGTATAGGAGATGTAGAAATATAACCTGCAAGCATTTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGTTCAGGAAACAAAGGGTTTTGCAGCAATTGCATGTGTCCTGTATGTTTGAGCTTTGATTGTGCAAGTAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTCAGAGGAATCTCATCAAACCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGACTTGAAACCTTGATCAAAGAGCTTGACTGTGTAAGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAAACTGATGACATGCTACTAAAGCTTCAAACTAAAATGGTATCTCCTTCAGATGCCTGCAATTACATCATACAATTTTTCAGCTATGCGGACAGCATGTCAGACTTTCCAGCTTCTGCTATTTCTTCAAAGGATTTGGCAGCCTCTCAAGCTAACCTTCCAAAGGATACACCATCATCTCTTTCAAAATCTAATTCTCTAATACCAAAATATCCTTATGACATGAGCTATTCAAGGTCACATTCTGATGCTTTGTCAAATGATCTTCATCAAAAAGACCTCAAAGCTTCCCTCTTAAGTGAACTAAAAAGTGAGGCTGATCTCCAATTGGAGGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAGGACCAAGACTGCACAAATGGAAGAAGAGTATGCTGCTAAGCTTTCCAAACTCTGTCTGCATGAGACTGAGGAAACACAGAGGAAAAAATTGGATGAACTGAAAGTCTTGGAAAATTCCTATGTTGATTACTATAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTATTGCAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2469	0.4172	MIGGKDLRNGVVDSEGENSRSKLSRPNFEPRKEYPDEKLGYPDKKGVEFLRDSEVGGGGGGVDGVLQSKSTKVVVGSSGLQELTLSYLCDNSKLGLAEKEIPGKSLLNSFEKMSHKGKEVVVVSENSNHDGKWVERDFLSLSETREDSSKRSLEEDVERESHSHRGDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRTKPNRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVGLSNHGGGGGLSSFMQGNSQYKTTSSDNHSFFPSELPARPRFEAAQSGDSRGRNSENLRALEGLDGGKIRKPSRPERIVREIVSESIPIMALTIQELTDEVIASSKEYLKNLIEKPEKKEELVSLQSRLERRSDLTKETLSKCNKVQLEILLATKMGLTSFLSGKVNLSEMLEIFLYRRCRNITCKHLLPVDDCDCKICSGNKGFCSNCMCPVCLSFDCASNTCSWIGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLIKELDCVRRIFRGSEDRKGKELHFKTDDMLLKLQTKMVSPSDACNYIIQFFSYADSMSDFPASAISSKDLAASQANLPKDTPSSLSKSNSLIPKYPYDMSYSRSHSDALSNDLHQKDLKASLLSELKSEADLQLEALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQKMIRTKTAQMEEEYAAKLSKLCLHETEETQRKKLDELKVLENSYVDYYKMKKRMQDEIDGLLQRMEATKQQWV.	823

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05755	822	Coils	Coil	724	758	-	-
	Seca11g05755	822	Coils	Coil	800	820	-	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	496	516	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	411	426	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	757	779	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	450	471	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	372	394	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	718	738	IPR004082	-
	Seca11g05755	822	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	569	588	IPR004082	-
	Seca11g05755	822	MobiDBLite	consensus disorder prediction	191	216	-	-
	Seca11g05755	822	CDD	PHD_OBE1_like	489	548	IPR047578	-
	Seca11g05755	822	Coils	Coil	772	792	-	-
	Seca11g05755	822	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	111	821	IPR004082	-
	Seca11g05755	822	MobiDBLite	consensus disorder prediction	144	171	-	-
	Seca11g05755	822	MobiDBLite	consensus disorder prediction	301	339	-	-
	Seca11g05755	822	Pfam	Coiled-coil region of Oberon	683	811	IPR032535	-
	Seca11g05755	822	MobiDBLite	consensus disorder prediction	10	40	-	-
	Seca11g05755	822	Pfam	PHD - plant homeodomain finger protein	459	583	IPR032881	-
	Seca11g05755	822	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05755	Seca-Chr11	157439962	157444187	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05755	459	588	PHD Gene Family	AT5G57380	24.615	2.72e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05755	-		-	gmx:100820216	1350.11