Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05728 ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAAAGGGGGACATCTCGGTCTGCAGCTCATGCCTGGCATGGCAGATCGTGACACAAAACCATTTTTCCCTGGTCGTGATCCAGCTATGTTAGTAGGTGCAAATGGAACTTTTCACCCTCGAGATTGTGTTGTTTCGGAGTCACCAATTCCGATAAGCTATGTCAGAGATAATTGGATAAGCCAGAGGGATAGGATTTTTAATATGCAGCCCACAAATCCTAATTATGCTGTTCTTCCAGAAACATCAGGACCTCCCTCCCTGCAAATGATACAAGCACCTGATACATCAAGAGATGAGAAGGTGGATAGAGTTGAAGAAGTAGTTGTTAAAAAGGAAGGTGGCCAATCAAAGAAAAGGCCAAGTAAGGGTGCTCTCACAACTCCAAAAGCTAAGAAACCTAGGAAGCCAAAGGATAATAGCAATGTTTCAGTTCAACGTGTCAAACCACCTAAGAAGACTATGGAGCTTGTGATAAATGGAATTGATATGGACATTTCTGGTCTACCTGTTCCAGTTTGTTCATGTACTGGGACTCCTCAGCAGTGTTATCGTTGGGGCTGTGGAGGTTGGCAATCAGCTTGTTGTACCACAAATGTGTCAATATATCCTCTGCCAATGAGCATAAAAAGGCGTGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAGAAGGTTTTAGAGAAACTTGCAGCTGAAGGTTATAATTTTGCTAACGCTATTGATCTGAAAACTCATTGGGCTAGGCATGGCACCAACAAGTTTGTCACTATCAGGTAG 837 0.4337 MDDDVLNMPNWGYYEPFKGGHLGLQLMPGMADRDTKPFFPGRDPAMLVGANGTFHPRDCVVSESPIPISYVRDNWISQRDRIFNMQPTNPNYAVLPETSGPPSLQMIQAPDTSRDEKVDRVEEVVVKKEGGQSKKRPSKGALTTPKAKKPRKPKDNSNVSVQRVKPPKKTMELVINGIDMDISGLPVPVCSCTGTPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANAIDLKTHWARHGTNKFVTIR. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05728 278 MobiDBLite consensus disorder prediction 94 166 - -
Seca11g05728 278 MobiDBLite consensus disorder prediction 94 110 - -
Seca11g05728 278 PANTHER - 1 278 IPR010409 -
Seca11g05728 278 SMART GAGA_bind_2 1 278 IPR010409 -
Seca11g05728 278 MobiDBLite consensus disorder prediction 112 135 - -
Seca11g05728 278 Pfam GAGA binding protein-like family 1 278 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05728 Seca-Chr11 156996920 156999259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05728 1 278 BBR or BPC Transcription factor family AT2G01930 58.586 1.13e-109 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca11g05728 GAGA_bind 1.1e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05728 - - gmx:100791533 502.286