Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05727 ATGTTAGACAACAGTGCTTCTTCAGGTGCACCTTCTTCTTCTTGTGATGCTGCCTTTGCATTATGTGAAAATGGGATTACTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCCCTCTCACCAAAGACCTTGTTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATCTTCAAATGCATAGGAGAAGACATAAGGTGCCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAAAAGGGTATTTGTTTGCCCTGAACCAAGTTGTTTACACCATGACCCTTGTCATGCCCTTGGTGACCTTGTGGGAATTAAGAAGCACTTTAGAAGGAAGCATAGCAATCACAAGCAGTGGGTTTGTGACAAGTGTTCTAAAGGGTATGCAGTTCAATCTGATTACAAAGCTCACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTTGAAAGTTTCATAGAACATCAAGATACATGCACAGTCCGGCAACACAGGCCAGAGTTACAAGTACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCAGCTGAACAGCCACCAGCTGGTTTATTAACTTCAGAGATATTACACAATAAGCCCAGCACCTCCTCACATCAGAGGCAGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAATAAATTCTCAAGAGAAAATTAGAACCTCAAAGGAAAACCATGAAACAACCAATTTGAAACTCTCAATAGGTTCATGTAGTAATAACAACAATGACAAAGGGATTAGTACTCATGAACAGTCAGAGAGAGAGAGACCATGTTCAGAAACAGTAGTACATTTGAGTCCACCTAACATTGTGAATGATTCCTCTACATTGGAAGTTGCAAGGTTGAAAGAGTTTACTAGTGAGGAGCTCAAGTTGGCTATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAAGCTAAGCATCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAACAAGCAATCAAGAAGATAAGCTCAACTGTTATGGAAATAACCTGTCAAGCTTGCAAGCAACAGTTTCAGTCCTCAACTGTTGGGGTTCCATCAGAAGAGACTTCCATTGTGATGAGTTACATGTCTTCAGTAAACACAGAAGGTGAAGCAGATCAATGA 1344 0.4226 MLDNSASSGAPSSSCDAAFALCENGITNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDTCTVRQHRPELQVLQPACSSRTASSTSPSSEANFSIAPLQGLPLPKPAEQPPAGLLTSEILHNKPSTSSHQRQHNLELQLLPSSINSQEKIRTSKENHETTNLKLSIGSCSNNNNDKGISTHEQSERERPCSETVVHLSPPNIVNDSSTLEVARLKEFTSEELKLAMAEKAYAEEARREAKHQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKISSTVMEITCQACKQQFQSSTVGVPSEETSIVMSYMSSVNTEGEADQ. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05727 447 Coils Coil 352 400 - -
Seca11g05727 447 SMART c2h2final6 100 130 IPR013087 -
Seca11g05727 447 SMART c2h2final6 59 81 IPR013087 -
Seca11g05727 447 SMART c2h2final6 136 163 IPR013087 -
Seca11g05727 447 MobiDBLite consensus disorder prediction 200 235 - -
Seca11g05727 447 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Seca11g05727 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 411 IPR031140 -
Seca11g05727 447 FunFam protein indeterminate-domain 12-like 38 106 - -
Seca11g05727 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Seca11g05727 447 Gene3D Classic Zinc Finger 121 197 - -
Seca11g05727 447 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Seca11g05727 447 MobiDBLite consensus disorder prediction 200 218 - -
Seca11g05727 447 Gene3D Classic Zinc Finger 37 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05727 Seca-Chr11 156936916 156940144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05727 23 446 C2H2 Transcription Factor Family AT2G01940 56.044 1.83e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g05727 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05727 K25871 - gmx:100806138 652.899