Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05722 ATGCCTTTAACCAATAGGCGAAAGAGATTCAAGGCATCTGCTGAGCTAGTAAGGCCAAAACCATTTAATAAAGTAGATATTTATCATAATTTCAAACCTTGTAATGACATTGTTTATAGGAGACATATGGAGCACAATGAATGTCAGGCATTTGAAATTGATGAGCCTAAAGATATTTTTTTGGGTCAAGTTGTGTTCAGCAAAGATGAAGCTTATAACTTATACCAAGAACATGCATTCAAAATGGGTTTTAGTGTAAGAAGAGGGAGGGCGTTGTACTATGATAGTGAGAAAAAGAATATACGTTTGAAAGACTATTATTGTTCCAAACAGGGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGCAGATTCAAGAACAAATTGCCAAGCTATGGTGAGATTTAATGTGAGTAAGGAAGGATTATGGAAAATTACAAAGCTGGAATTAAATCACAACCATGACTTTGTGCCACCTGAGCAAACATGGTTGCAGACTACCTAG 516 0.3566 MPLTNRRKRFKASAELVRPKPFNKVDIYHNFKPCNDIVYRRHMEHNECQAFEIDEPKDIFLGQVVFSKDEAYNLYQEHAFKMGFSVRRGRALYYDSEKKNIRLKDYYCSKQGFKNNEPQGEVTYERADSRTNCQAMVRFNVSKEGLWKITKLELNHNHDFVPPEQTWLQTT. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05722 171 Pfam FAR1 DNA-binding domain 74 162 IPR004330 -
Seca11g05722 171 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 52 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05722 Seca-Chr11 156841428 156842423 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05722 FAR1 8.3e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05722 - - mtr:112420296 205.682