Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05706 ATGGTTTTTCCTAAACCTCCTTCTGAGTCTGATCTCTTTCTTCACTCTAATTTTGCTTCTCGTTATGCCAGGGACTCTCTTCCTAGGTTCAGCATGCCAGAAAACTCAATGCCTAAGGAATCTGCATACCAGAACATACACGATGAGCTGCAGCTTGATGCAAATCCAAAGCTGAATTTGGCTTCCTTTGTGACCACATCCATGGAGGAAGAATGCAACAAGCTCATCATGGAATCCATTAACAAGAACTATGTTGACATGGATGAGTACCCTGTTACCACTGATCTTCATTTAACCCTTGATTTTTCCTGGTTTGCAAAACAGAACCGTTGTGTGAACATGATAGCACGTTTGTTCAATGCTGAAATTGGAGAAAATGAGACTGCAATTGGAGCAGGAACCGTTGGATCATCTGAGGCCATAATGCTGGCAGGCCTTGCTTTCAAGAAGAAGTGGCAGAACAAGCGCAAGGCTGAAGGCAAACCCTATGATAAGCCTAATATGGTCACTGGTGCCAATGTGCAGGTATGTTGGGAGAAATTTGCAAGGTATTTTGAGGTGGAATTGAGGGAAGTGAAGGTGAGAGAAGGCTACTATGTGATGGACCCTGTTAAGGCTGTTGAGATGGTGGATGAGAACACAATTTGTGTGGCTGCAATCTTGGGTTCAACTTATAATGGAGAATTTGAAGATGTGAAGCTCTTAAATGACCTGCTGCTAGAAAAGAACAAGCAAACTGGATGGGATACACCTATTCATGTTGATGCTGCTAGTGGTGGCTTTATTGCTCCTTTCCTTTATCCAGAGCTAGAATGGGATTTCAGACTCCCATTGGTGAAGAGCATAAATGTTAGTGGCCACAAATATGGGCTTGTTTATGCTGGAATTGGATGGGTTATATGGAGGAGCAAGGAAGACTTGCCAGAAGACCTTGTCTTCCATATTAATTACCTTGGAGCTGACCAACCCACCTTCACCCTGAATTTCTCTAAAGGTTCTAGTCAGATCATTGCTCAATATTATCAGCTAATTCGCCTTGGCCAAGAGGGATACCGGAGTATAATGGAGAACTGCAGAGAAAATGCTATGGTTCTGAAGGAACACTTAGAAGAAACTGGATGCTTTAACATACTCTCAAAAGACAATGGTGTTCCTGTGGTGGCATTTTCTCTAAAAGACAGAAGCCACTATGATGAGTTCAAGATATCAGAGATGTTGAGGCGCCATGGTTGGATAGTGCCAGCATATCCAATGCCACCTGGTGCACAGCACATCAATGTGCTCCGTGTGGTGATCAGGGCTGAGTTTTCACGCACACTTGCTGAACGCCTTGTGCTTGACATAAACAATGTGCTGCATGAGCTTGAGAAACATGTCCCCAAGCACACTGCCAAAGTGAACAGCAACATTAAGGAAGAGAAGGACTTGGTTGAAAGTGGGATCAAGAAAACTGCATTGGAAGCACAGAAGGAAATCATTGCTCAAGAATCCAACAAGCGTCAGAAAATCATGGCTGCCTAG 1521 0.4372 MVFPKPPSESDLFLHSNFASRYARDSLPRFSMPENSMPKESAYQNIHDELQLDANPKLNLASFVTTSMEEECNKLIMESINKNYVDMDEYPVTTDLHLTLDFSWFAKQNRCVNMIARLFNAEIGENETAIGAGTVGSSEAIMLAGLAFKKKWQNKRKAEGKPYDKPNMVTGANVQVCWEKFARYFEVELREVKVREGYYVMDPVKAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLLEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEDLVFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGQEGYRSIMENCRENAMVLKEHLEETGCFNILSKDNGVPVVAFSLKDRSHYDEFKISEMLRRHGWIVPAYPMPPGAQHINVLRVVIRAEFSRTLAERLVLDINNVLHELEKHVPKHTAKVNSNIKEEKDLVESGIKKTALEAQKEIIAQESNKRQKIMAA. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05706 506 PANTHER GLUTAMATE DECARBOXYLASE 9 500 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca11g05706 506 Gene3D - 1 65 - -
Seca11g05706 506 FunFam Glutamate decarboxylase 4 65 - -
Seca11g05706 506 Gene3D - 66 371 IPR015421 GO:0003824
Seca11g05706 506 Gene3D - 372 459 - -
Seca11g05706 506 SUPERFAMILY PLP-dependent transferases 16 457 IPR015424 -
Seca11g05706 506 FunFam Glutamate decarboxylase 372 459 - -
Seca11g05706 506 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 392 IPR002129 GO:0016830|GO:0019752|GO:0030170
Seca11g05706 506 NCBIfam glutamate decarboxylase 16 455 IPR010107 GO:0004351|GO:0006536|GO:0030170
Seca11g05706 506 FunFam Glutamate decarboxylase 66 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05706 Seca-Chr11 156612331 156615252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05706 1 494 Calmodulin-binding Proteins AT2G02010 75.304 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05706 K01580 - gmx:100812201 886.715