Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05690 ATGGCATCTTCCCAGATTGAAATCGCTTCCTCTTCTCCATTTGGTTGCGTTTTGATAGACCATAATCGTCGTGATTCAGCACAAAACCAGAACACTAAAAAACCAATCAGCAATTCATCTATTTGGGCCTCAAGAATTGCTAAGAACAACCTTGAAAGCCTAAAACTTGACAAAATTTGCAGAGACAACAAAGATGGTTCTTCTTCTTCATTGTCTGCATTGATGAGCCCGAGACACTCAAGGATCATTGATCGATGGGCTGCAAGACAAGCTCGAGAAGTGGTGACAACACTTGAGAAAGAGGTTGAGGTGTTTGAAAATTTTCCTTCAAGGAGAGAGGTTTCTGTGTCCCCTCCTCGTTCTGATGACTCATCTGATAGTGAAATCTCAAACCTTGGAGCTTCTTCTCTTGTTCAGATATGGGAAAAGAGGCTCAACAAATCCAACAGCACCAAACCAAATGCACTAGTTTCACCTGGAAGGACTAGTCTTGATAATGCAAGCTGCAATGAGAATGCATGTTCTGTGGAAGAACATTGTAGGGTCTCAGAAGAAGGGGAATCCAATGATGAACCCCAATGTAATGAGGAATCATCCCCAGATTGGGAATTTGATAAAACAGGACCAAGTGATCAATCATGTTCATCAAAATTGCAGAGTTCTGATGCTGCTGAAAGAGAGAGGGGAAGGGTTGCAAATATTATCAAGAGACTCACGGTAACAAATCAAATGCAAAGTCTAGTGTCATCATTGAATGATGACAATGATCAAGAGCAATGCAGTGGTATGACAGGTTCTCCACATAGAGAACACAAAGCTTTTGGTCAAGTCATAACTTGCCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAGAGTGACCGACATGGAGAGCTTAAAAATCTTGCAGAGAGAGGTGCAGTTTCCAAGTTCAATCAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTGCAACGTGGAGTAGCAGTTTTTGATCAATCCCACCAGAAATCATCAGTATCTGAAGTTAATAGACAACAACAAGGATCAGCAATTATGCAACTAAGGGAAAGATTTAAGATAAGAAATGAACATAGAACTTCAACTCTGGCAGAAGTATCTGATCCAAGAAGTCCTAGTAGAGAGATAGTAAGCAGCACCAGCACCACACAAATGGATAACTTCCCCACCTCTAATCAGCTCAGCAAAGATACTCACTACAGGACAGTTTACTGTAAAGAACCTACACAGAACTCTGTGTCTCAAACTAGTGCAGATGACAAAGAACAAGCTCATCCAAGTTCAGATGCCACATTCCAAGGAACATTCTTTGAAGCTCAAAATGTTGATACAAAAGAAACTATTGGGGCATCTCCATCCATTGCTGAATCAAATGCAAATGAGACAGCAGAAAAAGTAGAAGCAAGGGAACAGCAGTATGCTACTGCTGAAACAAGCTATGATGAGATAGTAGAAGAGGAAGAAGCCAGTGACCAGAATTATGATGAAGCTCGTTATGACTGGACAAGTCATATTTCTCGGCCTAGGAGCTATTGGGAAGAACTCAGGCAAGAATGGTATAGAGAAATGCTTGATTTTGGTTCAGACAATGATGAGAGACGTAAACTCCTTGAAAGAAGAACAGTATCAACTGTCCTTTCTAGTGACTTCCGGGAAAGGATGGATAGACTAATGAAGTCTCATAAGGGAACACAAACACACCTAGTCAATAGTCAGTATGATCAGGAAGAGCAAGACCAATTGATGGCATTTTTTAGAGAACGCTTGGGTTATAGAGGCAGTGATCAAGAAGATGGAAGAGATAGAGGGGAAGAGGGAGAGGTTAGGAGGAGAAATGAGGAAGAGGAGGAAGAGAAGAGTATCAGTAGTGGTTCAGATCATGAACTTGGTGATTATTTCAATCAATCCTCACCATCAATGCATACACCTTCCTCAACATGGAGTTATAGAGACAATGATGCTGGTGATGATTCTGATAGAGTTGCATCTGTATCCTCACCACTACCTTCTCAATCTCAGTCTTTCTATCAAGATAGACGACAATACTCTTCATCCACAAATCATCATTCAATTGAAATGGAATTCATATATGATATGAGAGGGCAAATGGATCAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCATTAAAGATCTGCATGGACATGCAGATGCAATCACAACAATTCAAGAATCAAGAGGTTCACACAGTTAAGGAAGAAAGGAAGAAGTTCCATAACAAGACACCAAAGAAAGGCAACTGTTGGATTTGCCATGAGAAGAAAGTGAACTCAGTATTATACAGATGTGGGCATATGTGTGCGTGTCTCAAGTGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAATAATAGATGTTGTCCGAGTATATACTAACACAGAACTTTTAGTGGTTGACAGAGTCTAG 2490 0.406 MASSQIEIASSSPFGCVLIDHNRRDSAQNQNTKKPISNSSIWASRIAKNNLESLKLDKICRDNKDGSSSSLSALMSPRHSRIIDRWAARQAREVVTTLEKEVEVFENFPSRREVSVSPPRSDDSSDSEISNLGASSLVQIWEKRLNKSNSTKPNALVSPGRTSLDNASCNENACSVEEHCRVSEEGESNDEPQCNEESSPDWEFDKTGPSDQSCSSKLQSSDAAERERGRVANIIKRLTVTNQMQSLVSSLNDDNDQEQCSGMTGSPHREHKAFGQVITCPRIRGRQAFNDLIMQFESDRHGELKNLAERGAVSKFNQRGRIQSLLRLRLLQRGVAVFDQSHQKSSVSEVNRQQQGSAIMQLRERFKIRNEHRTSTLAEVSDPRSPSREIVSSTSTTQMDNFPTSNQLSKDTHYRTVYCKEPTQNSVSQTSADDKEQAHPSSDATFQGTFFEAQNVDTKETIGASPSIAESNANETAEKVEAREQQYATAETSYDEIVEEEEASDQNYDEARYDWTSHISRPRSYWEELRQEWYREMLDFGSDNDERRKLLERRTVSTVLSSDFRERMDRLMKSHKGTQTHLVNSQYDQEEQDQLMAFFRERLGYRGSDQEDGRDRGEEGEVRRRNEEEEEEKSISSGSDHELGDYFNQSSPSMHTPSSTWSYRDNDAGDDSDRVASVSSPLPSQSQSFYQDRRQYSSSTNHHSIEMEFIYDMRGQMDQLFHEMSELRKSLKICMDMQMQSQQFKNQEVHTVKEERKKFHNKTPKKGNCWICHEKKVNSVLYRCGHMCACLKCANELQWNSGKCPICRAPIIDVVRVYTNTELLVVDRV. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05690 829 MobiDBLite consensus disorder prediction 641 665 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 463 484 - -
Seca11g05690 829 SUPERFAMILY RING/U-box 768 815 - -
Seca11g05690 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 828 IPR013083 -
Seca11g05690 829 ProSiteProfiles Zinc finger RING-type profile. 769 808 IPR001841 -
Seca11g05690 829 MobiDBLite consensus disorder prediction 604 697 - -
Seca11g05690 829 CDD mRING-HC-C3HC5_NEU1 766 818 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 422 442 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 373 409 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 379 409 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 677 697 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 604 639 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 205 220 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 184 228 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 110 130 - -
Seca11g05690 829 PANTHER BNAC05G24000D PROTEIN 1 820 - -
Seca11g05690 829 MobiDBLite consensus disorder prediction 251 270 - -
Seca11g05690 829 Pfam Zinc finger, C3HC4 type (RING finger) 766 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05690 Seca-Chr11 156465337 156469765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05690 769 821 C3H Transcription Factor Family AT3G06140 39.623 1.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05690 - - aprc:113855868 888.256