Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05685 ATGATGAGTTCACTGTCACCATATTCACTTGGGACTTGCCTTTCTTCCCTACACCCCCAAAAAAGTAACAACTTTTCAGCACCAAAATTTAAATCATCACCCCTTAGTTACACAACATGTGCTGTCCAAGTTAAACCACTAGCAGTTGAACAAAACGAGAGGCAATTCAAGAGAAGAGATGCAATAGGCCTTGCCTTGAGTTTTGGCCTTCTTCATTCTTTCTTGCAACCACAACCCACATCAGCAGCAGAAGCAGTTCCATGTGAATTACAATCAGCTCCTTCAGGCCTTGCCTATTGTGATAAACTTGTCGGCACAGGTCCTCAAGCTGTTAAGGGACAGCTTATTAAAGCACATTATGTTGGGAGATTGGAGAATGGGAAAATTTTTGACAGCAGCTATAATCGTGGCAAGCCACTTACTTTTCGCGTGGGTGTTGGAGAGGTCATCAAAGGATGGGATGAAGGCATTTTAGGAGGTGATGGAGTTCCTCCCATGCTTGCAGGTACTTGTTTTTCAATCATTGTAAATTCATTGTTTTATGACATGTCAAGGGAAATTATTTATTCCTTTCTAACATAG 582 0.4158 MMSSLSPYSLGTCLSSLHPQKSNNFSAPKFKSSPLSYTTCAVQVKPLAVEQNERQFKRRDAIGLALSFGLLHSFLQPQPTSAAEAVPCELQSAPSGLAYCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGKPLTFRVGVGEVIKGWDEGILGGDGVPPMLAGTCFSIIVNSLFYDMSREIIYSFLT. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05685 193 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 113 176 IPR001179 GO:0003755
Seca11g05685 193 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 108 176 IPR001179 GO:0003755
Seca11g05685 193 SUPERFAMILY FKBP-like 91 177 - -
Seca11g05685 193 Gene3D - 84 185 IPR046357 GO:0003755
Seca11g05685 193 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 65 170 IPR044183 GO:0009507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05685 Seca-Chr11 156441375 156444064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05685 113 157 Calmodulin-binding Proteins AT5G48570 53.333 2.44e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05685 K01802 - gmx:100778390 204.527