Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05663 ATGAGTTCTGCTGATAAACAAGAAGCTGATCAAAACTCAGGCAAACGAGTGATGCGTCGTCACAAAGATCATCAGAGAGCTAGACTTGAAGAAGTGTTCAAGACATGCCAACATATAGATAAAAACCAACAACATCAATTGGGCATGGAACTTGGACTTGAGCCAACACAAATAAAATTTTGGTTTCAAAATAAGAGGACACAAGTAAAGGCACTATCTGAGCGATCTAATAACTACGTCCTTCGGCAAGAGAATGAAAAGATACAATCAGAAAACATCCAACTAAGAGAGACTTTAAAGAAGTTGCCTTGCTTGTCTTGTGGAGATCCAATCTTAGTGGAAGATCACGAACCTTATATGGAAAAGTTAAGGTTGGAAAATGCATGGTTACTTCAACAGCATGAGAAATTATCCAAGCTTTTGGCATGCAAAAACGATGAGGAAAATCCAATTTTGCAACCTACCCTTACATCTTTCCATGATCCATCACAAGAAAGTTTGCTAAACCAAAATGTTGAGATAAATCCAATAGTGCCTTCTACCATTCCATCTTCATCACAACATGATCCATCACATGGAAGTAATTTGCTAAACCAAAACATTGAAAACCCTACTCATGATATAAATCCAATTGTATCTTCTACCTTTCCATCTTCACCAATGCATGATCCATCACATGGAAATTTTCCAAACCAAAACATTGAAATTCCTTCTCCTATGATGATAGATCCAATCCTTCCTCCTACCCTTCTATCTTCCAATGATCATCCCTCACAAGGAAGTTTTCTAAACCAAACCATTCCAATTCTACTTCGAACCCTTCCATCTTCAAATGATCCTTTACAAGGAAATTTGTTAAACCAAAACATTGAAATCCCTACTATTGATTATCAAAACATTCCTACCATTACTCCTTCCCTTGACCAAAATGTTTCTGAAATCACTCCTGAGCCTAATAATGAAGATATTTTTGCCTTTGATGAGGATTTTCCTGTGGTTGGTCTAGATTTTGATGTTGAAGGAATTTTGGATGATTGTGAGTGGTCTCAATCAATGAGCACAGATATAGAAAAAGTTTTAATGACTGAGATTGCAAATACTGCTACGGAAGAATTAACAAGGCTTTTGCGTATGAATGAGCCTTTCTGGTTTAGGTCTATGAAAGATGAGAAATTCATTCTTCAGCGCGAAACCTATGAACAGATATTTCATAGGTTTAGTCGCTTAAAGGGACGTATAGAGTCATCAAAAGATTCACGAATGGTGAGCATGGGTGGGACACAATTGGTTGAAATGCTTTTGGATTCGGACAAATGGGTTGATCTTTTCCCAACAATTGTTAGAAAAGCACAAACAATCCAAGTATTTGAAAGCGGATTGTCAAGAAGCCGAAATGGAGCTTTGCAATTGATTTCTTGGGTCGAACATGTAGAAGTAGATGATAAGATCCAAACTGACCGAAGTGAAGTTATTTGTGAAGATGCATATGGAGCAGAAAGATGGGTTTTGACACTTGAAAGAATGTGTGAAAGATTCACACGCACCTCACTTGAAACTATTCCTAGTTCGGATGCCAGAGGAGTGATCAATTCAGTTGAAGGAATGAGGAGCGTGATGCAGCTTGGTCATCGTATGATTAAGCTTTATCATGGAATTTTTGACATGTCAAGTAATGTGGAGATATTGAATAATGGCAAGGTTAGGGTATTTGTTCGAAAAAACACAGAGCTAGGACAACCAAACGGCATGATTGTCAGTGCTGCTACCTTCTTTCGACTTCCTCTATCTCCTCAAAATGTTTTGGACCTCTTGAAAGATATTAGTAAACGACCTCAGTGGGATGTTCTATGCAATGACAATCCAGTGCACGAGATTCAACGCATCTCAACGGGAACAAATTCAGAAAATTGTACTACAATTATTCGGCCTTTCATCCCTAAAGAGAATGATATATTGATTCTACAAGAAAGTTATATGGATCCATTGGAGTCAATGGTGATATATGCTCCTATGGATATAGAAACATTGAATTATGCAATAAAGGGAGGAGACTCATCACCATTGCCTCTTCTTCCCTCTGGCTTTACCATAACAAGGGATGGTCAACCAAATGTTGTTGGGGGACAATCTGGAGGTTCATTAGTAACTATTGGGTATCAAATTCTAGCTTGCAGTGCAATGGAGGACTTAAACATGGAAAACTCGGTGGCTTTTGTCAATACACTTGTTACCTCAACAGTGAAGAAAATTAAAGTTGCTTTGAGTTGTTGA 2271 0.3796 MSSADKQEADQNSGKRVMRRHKDHQRARLEEVFKTCQHIDKNQQHQLGMELGLEPTQIKFWFQNKRTQVKALSERSNNYVLRQENEKIQSENIQLRETLKKLPCLSCGDPILVEDHEPYMEKLRLENAWLLQQHEKLSKLLACKNDEENPILQPTLTSFHDPSQESLLNQNVEINPIVPSTIPSSSQHDPSHGSNLLNQNIENPTHDINPIVSSTFPSSPMHDPSHGNFPNQNIEIPSPMMIDPILPPTLLSSNDHPSQGSFLNQTIPILLRTLPSSNDPLQGNLLNQNIEIPTIDYQNIPTITPSLDQNVSEITPEPNNEDIFAFDEDFPVVGLDFDVEGILDDCEWSQSMSTDIEKVLMTEIANTATEELTRLLRMNEPFWFRSMKDEKFILQRETYEQIFHRFSRLKGRIESSKDSRMVSMGGTQLVEMLLDSDKWVDLFPTIVRKAQTIQVFESGLSRSRNGALQLISWVEHVEVDDKIQTDRSEVICEDAYGAERWVLTLERMCERFTRTSLETIPSSDARGVINSVEGMRSVMQLGHRMIKLYHGIFDMSSNVEILNNGKVRVFVRKNTELGQPNGMIVSAATFFRLPLSPQNVLDLLKDISKRPQWDVLCNDNPVHEIQRISTGTNSENCTTIIRPFIPKENDILILQESYMDPLESMVIYAPMDIETLNYAIKGGDSSPLPLLPSGFTITRDGQPNVVGGQSGGSLVTIGYQILACSAMEDLNMENSVAFVNTLVTSTVKKIKVALSC. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05663 756 Coils Coil 81 101 - -
Seca11g05663 756 Pfam Homeodomain 19 70 IPR001356 GO:0003677
Seca11g05663 756 MobiDBLite consensus disorder prediction 1 17 - -
Seca11g05663 756 CDD homeodomain 15 70 IPR001356 GO:0003677
Seca11g05663 756 SMART HOX_1 14 76 IPR001356 GO:0003677
Seca11g05663 756 ProSiteProfiles START domain profile. 354 459 IPR002913 GO:0008289
Seca11g05663 756 SUPERFAMILY Homeodomain-like 10 72 IPR009057 -
Seca11g05663 756 Gene3D - 2 89 - -
Seca11g05663 756 MobiDBLite consensus disorder prediction 1 24 - -
Seca11g05663 756 MobiDBLite consensus disorder prediction 178 235 - -
Seca11g05663 756 SUPERFAMILY Bet v1-like 562 721 - -
Seca11g05663 756 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 471 IPR042160 -
Seca11g05663 756 Pfam START domain 363 472 IPR002913 GO:0008289
Seca11g05663 756 MobiDBLite consensus disorder prediction 178 238 - -
Seca11g05663 756 ProSiteProfiles 'Homeobox' domain profile. 12 72 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05663 Seca-Chr11 156091416 156098143 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05663 354 755 Homeobox Transcription Factor Family AT1G73360 35.758 5.16e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g05663 START 3.3e-05 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05663 K09338 - gmx:100795753 370.163