Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05659 ATGCACATTTCCATATCTTTTCTCAAACATGCATGGTACATTTCTTCACTGAAGATGGAAAGAATGGATTCTAGTGAACAAGAAGCTGAAAACTCAGCCATTGGACGAGGGATTCGTCGTCACACAGCTTATCAGAGAGCTAGGCTCGAAGAAGTATTCAGGAATTGTACTCAACATCCAAATGCCAAGCTACGAGATCAATTAGGTGCTGAGCTTGAACTTGATCCAGAACAAGTTATAACTGAGCGATCTAGTTACGATTCCCTTCTACTAGAGAATGAAAAGATAAAATCAGAAAACAACCAACTGAGAGAGACTTTGAAAAAGTTGCGTTGCTTGTCTTGTGGGGGTCCAACCTTAGTGGAAAAAGATCACGAGACTTGTATGGAAATGTTAAAGATGGAAAATGCAATTTTACATGAAAAGCATGAGAGAATCTCCAAGCTTCTAGCAAATGCAAACAGTGGGACAAATCCAATTATGTCTCCTACACATGAATCTTCACATGATCCTAATTTACAACAAAGTTTGCTAAACCAAAATGTTGAAAACCCTCCTCCTATGATAAATCCAACTCTGAATTCTACACTTCCACCATCAACACATCATGATCCCTCAAATGGAAGTTTGCCAAACCAAAACTTTGAAGTTCCTAATTCTCTTGAGATAAATAATCCAATTCAGCCTCCAACACTTCCATCATCACCACATGATCATCTCACACAAGGAAATTTGTTGAACCAAAACAATCTAATTATGTCTCCAACGTTAACACTTCCATCATCACCACATGATCATCATCCTACACAAGGAAGTTTGCTAAACCAACAAAACACTGAAATTCCTGCTCCTACCATTGATCAAAATGTTTCTACAATTACTCCTACCATTGATCAAAACATTCCACCTCTTTCTCCTGCTGATGAGGTTCTTCTTAATTTTGCCCTTGATGAGGATCTTCCTCCTCTTGATATAGATTTTAGTTCACTTAAAGGAATTTGGGATGATTATGAACAACCCATACATATGGAGACGGTTACTAATGAAGTTATGGACAAAGATTCAATGATGGAGATTGCAATTAGTGCCATGGAAGAATTGACAAGGATTATGCATATCAATGAGCCCCTTTGGTGTACGTCTATATGGGATAATAAATTCATTCTTCAACGTGCAACATATGAAAACACATTTCATAGGTTTAGGCGCTTAGAGGGACCTCGTGCACATACAGAGTCATCAAAAGATTCAGGAATTGACAAATGGGTTGATCTTTTCCCAACAATAGTTAGAAAAGCACAAACAATCCAAGTATTTGAAAGTGGTTTGCCAGGAAGCCGAAATGGAGCATTGCAACTGATGAATGCAGAAATGCACATTCTTTCACCTTTGATTCCATCTCGGGAATTCATCTTCCTTCGTTATTGTAAACAAATTGAAGAAGGTGTGTGGGTAATATCAGATGTGTCATTTGATTCCTCAAAATATGAAGCCATTCTTTCTCGAGCTTGGAAGTTTCCTTCTGGATGCATGATTCACCAAAATACCGTTGGATCCTGCAGGGTTTCTTGGGTGGAACACGTAGAAGTGGATGATAAGATTGAACCTAACCAGCTTTCCAAAGAAGTTATTTGTGACAAAAAAGTATATGGAGCGGAAAGATGGGTTTTGACACTTCAAAGAATGTGTGAAAGATTTGCACCCACCTCATTTGAAAATATGCCTAGTTCTGGTGCTAGAGGAGTGATAAGTTCAGCTAAACAAATGAGGAATGTGATGCAACTTGCTAATCGTATGATTAAGGTTTATCATGGAATTTTGAACATGTCAGGTAACATGAATAATAATGACAAGGTAAGGGTATCTGTTCGCAAAAACACAGAGCTAGGGCTGCCAAAGGGCATGATTGTCAGTGCTGTTACCTCATTTTCGCTTCCGGTATGTCCTCAAAATGTTTTGAACCTTTTGAAGGATATTAATAAACGACCCCAGTGGGATGTTCTATGTAATGACAGTCCAGCACTTGAGATTCAACGCATCTCAACTGGAATATACTCTAACAACTGTACTACAATTATTCAGCCTTCCATCCCTACAGAGAAAGCTGTGTTGATTCTAGAAGAAAGTTATATAGATCCTTTGGAAGCTATGTTGGTATATGCTCCTTTGAATATACAATTATTAAATTTTGCATTATTGGGAGAAGACTCTTCATCATTTCCTCTTCTTCCCTCTGGTTTTACAATAATGAGGGATGATCGATCAAATGCTGTTACTGAACAATCTGGAGGTTCATTGGTAACTCTTGGGTACCAAATAATAGCTTGTTCTACAATGAACCTAAACATGGAAAATGTTGTAGCTTCTGTCAATAAACTTGTCATCTCAACTGTGGAGAAATTAAAGAATCTTCTTTGA 2418 0.3792 MHISISFLKHAWYISSLKMERMDSSEQEAENSAIGRGIRRHTAYQRARLEEVFRNCTQHPNAKLRDQLGAELELDPEQVITERSSYDSLLLENEKIKSENNQLRETLKKLRCLSCGGPTLVEKDHETCMEMLKMENAILHEKHERISKLLANANSGTNPIMSPTHESSHDPNLQQSLLNQNVENPPPMINPTLNSTLPPSTHHDPSNGSLPNQNFEVPNSLEINNPIQPPTLPSSPHDHLTQGNLLNQNNLIMSPTLTLPSSPHDHHPTQGSLLNQQNTEIPAPTIDQNVSTITPTIDQNIPPLSPADEVLLNFALDEDLPPLDIDFSSLKGIWDDYEQPIHMETVTNEVMDKDSMMEIAISAMEELTRIMHINEPLWCTSIWDNKFILQRATYENTFHRFRRLEGPRAHTESSKDSGIDKWVDLFPTIVRKAQTIQVFESGLPGSRNGALQLMNAEMHILSPLIPSREFIFLRYCKQIEEGVWVISDVSFDSSKYEAILSRAWKFPSGCMIHQNTVGSCRVSWVEHVEVDDKIEPNQLSKEVICDKKVYGAERWVLTLQRMCERFAPTSFENMPSSGARGVISSAKQMRNVMQLANRMIKVYHGILNMSGNMNNNDKVRVSVRKNTELGLPKGMIVSAVTSFSLPVCPQNVLNLLKDINKRPQWDVLCNDSPALEIQRISTGIYSNNCTTIIQPSIPTEKAVLILEESYIDPLEAMLVYAPLNIQLLNFALLGEDSSSFPLLPSGFTIMRDDRSNAVTEQSGGSLVTLGYQIIACSTMNLNMENVVASVNKLVISTVEKLKNLL. 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05659 805 SMART START_1 358 565 IPR002913 GO:0008289
Seca11g05659 805 Pfam START domain 429 565 IPR002913 GO:0008289
Seca11g05659 805 MobiDBLite consensus disorder prediction 254 273 - -
Seca11g05659 805 ProSiteProfiles START domain profile. 349 568 IPR002913 GO:0008289
Seca11g05659 805 SUPERFAMILY Bet v1-like 351 566 - -
Seca11g05659 805 MobiDBLite consensus disorder prediction 153 172 - -
Seca11g05659 805 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 38 804 IPR042160 -
Seca11g05659 805 Gene3D - 428 549 IPR023393 -
Seca11g05659 805 Coils Coil 86 113 - -
Seca11g05659 805 CDD START_ArGLABRA2_like 356 564 - -
Seca11g05659 805 MobiDBLite consensus disorder prediction 178 243 - -
Seca11g05659 805 CDD homeodomain 39 79 IPR001356 GO:0003677
Seca11g05659 805 SUPERFAMILY Bet v1-like 589 773 - -
Seca11g05659 805 Pfam Homeodomain 40 79 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05659 Seca-Chr11 156033677 156041826 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05659 351 805 Homeobox Transcription Factor Family AT1G73360 40.606 3.34e-104 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g05659 START 1.8e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05659 K09338 - gmx:100783586 567.77