Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05656 ATGGATTTTCCATCTGGTGGGTCTGGTGAGGAACAAGATTCTCACCAATCAGGCAAGGATGAAAGGATGCATCGTCATGCCTCTTATCAGATATCCAAACTTGAAGAAATGTTCAAGGAATACTCACATCCAGACGAAAGTCGACGACTTCAATTAAGCGAAGAGCTTGGACTTGAACCAAGACAAGTAAAATTTTGGTTCCAAAATAGGAGGACAAAAGGAAAGAACATAAGTGAGCGAATGGATAACAATGCTCTTCGGATTCAGAATGAAAAGTTTCGATCAGAAAACATTGTACTTCGAGAGACGTTGAGGGGTGTTCTTTGCTTATCTTGTCGGCGTCCAACCATACGACAAGATGACAACGAACCTTCCGCAGAAGAAGTGAAGATAGAAAATGCACTGTTACGTCAAGAGCGGGAGAGATTAACCGGGCTTCTGCCACTGAACCTGCTATTAGATAATCCAATGCTTCTTGAAACAAATCCTCCACCTTCACCTGATTTATGGAAAAGTTTGCTAAACCAAAATGTTGAAATGCCTGCTCCTGCTCCTGTTCCTGCTCTTGTTTCTACTCCTATTCCTCGTATTCCTATTCTTGATAAACAAATTCCTGCTCCAGATCCAAACATTAATATTCCTGCTTTTGGTCATGATATTCCTCCCATTATTCCTACCCTTGATCAAGATATTTCAACTATAACTAATCAAAATATTCCTATTCTTGATCAAGATATTGCCTCCTTTGGTCAGGATATTCCTTCTCTTGATGATCTAGATTTTGATGCAATTTCACATGATCATTTGTTGCCCCTCCCTTTGAGCCCAATAATTATTACAGATCCTGAGTCAGATAAAGCATTGATGATTGAGATTGCAAATACTGCTATGGAAGAATTAGTAAGGCTTTTGAGTTCAAATGATCCTTTTTGGTTCAGATCTGTAGTTGATGGAAAATTCATTCTCCAACGTGCAATGTATGAAAAGATATTTCATAGAGGTTATCACCTAAAGGGACCCCATGCACGTATAGAGTCTTCAAAGGATTCACAAATAATCAACATTGGTGCCACCCAATTGGTTGATATGCTTTTAAATTCGGACAAATGGGTTGATCTTTTCTCAACAATAGTTACAAAAGCACAAACAATCCAAGTATTTGAAAGCGGTTTGTCAGGAAGTCGAGATGGAGCTTTGCAATTGATGAATGCACATTTGCACATTCTTGCACCTATGCTTCCAACTCGAGAATTTGTCTTCCTCCGTTACTGTAAAAAAATTGAGGAAGGTATATGGGTGGTAGTAGATGTGTCATGTGATTCCTCATCACAATATGGAGCCACTCCTACTCACACTTGGAGGTTTCCCTCTGGATGCGTGATTCAAAAAATCAGTGATGGATCTTGCAGGGTTTCTTGGCTCGAACATGTAGAAGTGCATGAGGAGATTCCAATTGACCATCTTTTTAGAGAAGTTATTTATAGCAAGAATCCATATGGAGCAGAAAAATGGCTTTTTACACTTGAAAGAACGTGTGAGAGATTTTCATGCTCTACTACACGTGAAAACATACTTGCTTATGACATTGAAGGAGTGATTGAAGTAGCTGAAGGAAGGAGGAGTGTGATGCGGCTTGGTTATCGTATGCTGAAGAGTTTTTTTGGAACTTTAGACATGTCAAGTAACATGGATATCCCAACAGATTTAACTAGGTTCGGTAATGGTTTGTTTAGGATATCTGCTCGCCAAAGCACAGAACCAGGCGTGGCAAAAGGCATGGTTGTCAGTGCTGCTATCTCCTTTTGGCTTCCTCTTTCTCCTCAGAATGTTTTTGACTTCTTGAAAGATGGTAACAAACGAACTCAGTGGGATGCTCTAAGCTATGGAAATCAAATGCGTGAGATTCAACGCATCTCAAATCGAGATCATCCTGGCAATTGTACTTCAATTTTTCAGCCTTTATTCCCTGAAGGAAGTAATATGTTGATTCTGCAAGAAAGTTACACAGATCCATTAGGATCTTTGGTGGCATTTGCTCCTTTAGATTTATCAACATTGAATTTCGCAATGAAGGGAGAAGACTCTTCAAAGTTTCCTCTTTTGCCCTCTGGCTTTAGCATAACAGGTGATGGTCAATCAAATGTTGGCAACTTAGGAGGTTCGTTGGTAACAATTGGGTACCAAATATTGTCTTGCAATCCAACTGAAACGGGACAGCCAGAAAAGGATTCTATAGATGCTGTCACCTCACTTGTTGCCTCAACCGTGGATAAAGTTAAAATTGGTCTACATTGTTCCTATATAGATTAA 2310 0.3961 MDFPSGGSGEEQDSHQSGKDERMHRHASYQISKLEEMFKEYSHPDESRRLQLSEELGLEPRQVKFWFQNRRTKGKNISERMDNNALRIQNEKFRSENIVLRETLRGVLCLSCRRPTIRQDDNEPSAEEVKIENALLRQERERLTGLLPLNLLLDNPMLLETNPPPSPDLWKSLLNQNVEMPAPAPVPALVSTPIPRIPILDKQIPAPDPNINIPAFGHDIPPIIPTLDQDISTITNQNIPILDQDIASFGQDIPSLDDLDFDAISHDHLLPLPLSPIIITDPESDKALMIEIANTAMEELVRLLSSNDPFWFRSVVDGKFILQRAMYEKIFHRGYHLKGPHARIESSKDSQIINIGATQLVDMLLNSDKWVDLFSTIVTKAQTIQVFESGLSGSRDGALQLMNAHLHILAPMLPTREFVFLRYCKKIEEGIWVVVDVSCDSSSQYGATPTHTWRFPSGCVIQKISDGSCRVSWLEHVEVHEEIPIDHLFREVIYSKNPYGAEKWLFTLERTCERFSCSTTRENILAYDIEGVIEVAEGRRSVMRLGYRMLKSFFGTLDMSSNMDIPTDLTRFGNGLFRISARQSTEPGVAKGMVVSAAISFWLPLSPQNVFDFLKDGNKRTQWDALSYGNQMREIQRISNRDHPGNCTSIFQPLFPEGSNMLILQESYTDPLGSLVAFAPLDLSTLNFAMKGEDSSKFPLLPSGFSITGDGQSNVGNLGGSLVTIGYQILSCNPTETGQPEKDSIDAVTSLVASTVDKVKIGLHCSYID. 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05656 769 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Seca11g05656 769 MobiDBLite consensus disorder prediction 13 27 - -
Seca11g05656 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 761 IPR042160 -
Seca11g05656 769 SMART HOX_1 18 81 IPR001356 GO:0003677
Seca11g05656 769 MobiDBLite consensus disorder prediction 1 27 - -
Seca11g05656 769 FunFam Homeobox-leucine zipper protein HDG1 7 93 - -
Seca11g05656 769 Gene3D - 290 495 IPR023393 -
Seca11g05656 769 SUPERFAMILY Bet v1-like 538 728 - -
Seca11g05656 769 Gene3D - 7 91 - -
Seca11g05656 769 Pfam Homeodomain 25 75 IPR001356 GO:0003677
Seca11g05656 769 SMART START_1 291 514 IPR002913 GO:0008289
Seca11g05656 769 CDD homeodomain 28 76 IPR001356 GO:0003677
Seca11g05656 769 SUPERFAMILY Bet v1-like 284 515 - -
Seca11g05656 769 Coils Coil 126 146 - -
Seca11g05656 769 ProSiteProfiles START domain profile. 282 517 IPR002913 GO:0008289
Seca11g05656 769 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Seca11g05656 769 CDD START_ArGLABRA2_like 286 513 - -
Seca11g05656 769 Pfam START domain 291 514 IPR002913 GO:0008289
Seca11g05656 769 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05656 Seca-Chr11 155997308 156003460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05656 254 765 Homeobox Transcription Factor Family AT1G17920 42.264 1.61e-124 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g05656 START 2.1e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05656 K09338 - gmx:100783586 598.201