Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05654 ATGCATGAGCAAACTGGTTGCATTGATCCCAACACAATGGCAGAAGGTGTAAGCTCTCTAAATGATAGCTTTACTCAAACTCTGCCAGACCCACCATCATCACTTATGGTTGCAGGCAATACCATAAACAGCAATCATAGCCTTGAAGAGAATTTCAGGCCTTCTGTGGAGGAACTCACCTATCACCATCACAATCTACAGCAACCAGAAGATGTCTCCAACTTTGTAAATGGAGTCACTGCCACATCTATAGACATCACACATCCACAGCATCTTGGTTTGAACATGGGGAACTCCTACAACAACAACATGGACACCCATTTGATCCAAGATGTCATTGATGGCCTTCCCTATCAGAACTCAACTTGGGACCCTAGTGTTCAGGAGTTACAAGATATGGGCTATACTAATCACCCAGAACACCACCAACCACATGAACAGTTTCAACATATGGAGGTACAAAATTGCAGCCAAAGCTACAATCCCTCTTCCATACTGGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACCTACCCAGATGTTCAGCTTCATCTTTGCTGACCAATCCACCCACCATTTGCATCACAAACCCAACTCAGAAGACACCCAATTTTCATAATTCAATGGGGTTTCTTGGAGACCTTCCAATAGGATCAGAGAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTCCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCTCTTTTTGGTGGAGGGGATGAGATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTTCTGGAATTCAATAGGGTCACTGCTTCTGTTGGCAAAGGAAGGGAGGGAAAAGGTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAGTACAAAATCTTGAAGGATCTTATCCCAAACCCCACCAAGGTAGCTGATAGAGCATCTGTGGTGGGAGATGCCATTGAGTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGGAGGGAGAGGTGCAAGAGGCCCAAAACTGAAGATGATGCTGCAGAGAGCTGCAACATAAAGCCTTTTGGTGATCCAGATGGATGCATAAGGACTTCATGGCTACAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATTGATGATGATGTTACAATCAAACTCTTTCAAAGGAAGAAGATCAACTGTCTGCTGTTTGTCTCCAAGGTTCTGGATGAACTCCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCCAACAGGGTGATTGATGTTCTGGACAGTCAGTATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1509 0.4447 MHEQTGCIDPNTMAEGVSSLNDSFTQTLPDPPSSLMVAGNTINSNHSLEENFRPSVEELTYHHHNLQQPEDVSNFVNGVTATSIDITHPQHLGLNMGNSYNNNMDTHLIQDVIDGLPYQNSTWDPSVQELQDMGYTNHPEHHQPHEQFQHMEVQNCSQSYNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPPTICITNPTQKTPNFHNSMGFLGDLPIGSENTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGGDEIEGDGSQLDMGVLEFNRVTASVGKGREGKGTKHFATEKQRREQLNGKYKILKDLIPNPTKVADRASVVGDAIEYIRELIRTVNELKLLVEKKRYGRERCKRPKTEDDAAESCNIKPFGDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDSQYAAAVPHTSSY. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05654 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 366 IPR036638 GO:0046983
Seca11g05654 502 PANTHER TRANSCRIPTION FACTOR BHLH91 2 495 IPR045895 GO:0006355|GO:0048658
Seca11g05654 502 Gene3D - 300 375 IPR036638 GO:0046983
Seca11g05654 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 353 IPR011598 GO:0046983
Seca11g05654 502 SMART finulus 309 359 IPR011598 GO:0046983
Seca11g05654 502 CDD bHLH_AtMYC1_like 308 373 IPR045896 -
Seca11g05654 502 Pfam Helix-loop-helix DNA-binding domain 306 353 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05654 Seca-Chr11 155967843 155970074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05654 6 497 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.795 2.48e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g05654 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05654 - - gmx:100782512 801.971