Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05635 ATGGCTGAAACTCACTCTCATGCTCATGCTCATGCTAATTCTCCTACACCCATAATAACCTACCCTTCTCATGAACAAGTTGGTGGTTTCGATTGGATGGTTCTTGTGGCAGCAATTCTATGTGCCTTTGTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTTTTTCAATGTGCCAATCGTGTCCTAACAGAGCCTCTTCAATGGATTGCTTCTCGTAGGCTCAATTCTGGACTTAAGAGGAAAGAAATGGTAGCTTTGCCAACTTTAACATATAGCCATTCATCAGGTGCTGCTTCTGATCCATCTTCTTCAGCTTCAAGTTGTGTCATTTGCTTAGCAGAATTCTGTGATGGGGAACAAATAAAGTTCCTCCCAAAGTGCAATCACCATTTCCATGTGGTTTGTATTGACAAGTGGCTTCTATCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAA 474 0.4156 MAETHSHAHAHANSPTPIITYPSHEQVGGFDWMVLVAAILCAFVCALGLNTMLQCVFQCANRVLTEPLQWIASRRLNSGLKRKEMVALPTLTYSHSSGAASDPSSSASSCVICLAEFCDGEQIKFLPKCNHHFHVVCIDKWLLSHSSCPTCRHLTQV. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05635 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 156 IPR013083 -
Seca11g05635 157 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Seca11g05635 157 SMART ring_2 110 151 IPR001841 -
Seca11g05635 157 SUPERFAMILY RING/U-box 109 154 - -
Seca11g05635 157 PANTHER RING-H2 FINGER PROTEIN ATL78 7 154 IPR044602 GO:0016567|GO:0016740
Seca11g05635 157 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05635 Seca-Chr11 155759204 155759677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05635 1 153 C3H Transcription Factor Family AT3G10910 39.752 1.44e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05635 - K19040 gmx:100779286 232.646