Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05623 ATGAGGCAATTGGTTTGTAATAGAGCGGGAGAGAGAAGTGAGAAGCATCTTAATAGGACTGATAGAATTAGGGAGGCAAAGGCCTTGACCGGAACTAATTGTAATGCAAGGCTCCGTATTTCCTTAGATTACATAAGAAGAAAGTGGAGGGTTGGAATCTTTGAGCCAGCTCACAACCATGAATTGACTCCTGCAAGTATGATACATTTGCTACCTGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGATGGTCTACATCATTATGGTGTTAGGACTTGTCATATAATGGGTCTTATAATGGGTCAAAAGGGAGGCTATTCTGATCTTCGTTTTTGTAAGAAGGATTTGTACAATCATATTGATAAAGAGAATCGGGCAAAAATAGAGGATGGGGATGCTTTTGTTGCGTTGTGTTACCTTCAAATTAACTCATTCATTAAGAGGTATGTTCAGAGCAAAAATAGCCTTGTTGATTTTCTTCACAATTTTGAGAGAGCTCTCAATGAATATAGACACGACGAGTTAACTTCAGATTTCAAGTCGAAATACACTCAACCTGTGATGACTACTGCTTTGGAAAGATATGAAGTTCAAGCTTCAAATGTCTACATGAGGAATAAGTTTTTTGATGTTCGAAAGCAAATTGAGAAAGTTGTTGCCATAAATGTGTTTGAGAGGACAAATGTTGGTAATGTTATTACAATGAAGATGAATAAATTCGGAACTCCTGATTCTACTTATATTGTTATGTTGGATAAGTCTGATGGTAATTTCGTTTGTGATTGTCGCATGTTTGAATCATGTGGCCTCCCATGTTCACACATTTTCAGTGCAATGAAGCATGAGCAAGTGGAATCCATTCCTGCATCTTTGATTTTGAAAAGGTGGACTAAATTGGCTAAAGTTGAGCACATTTCTTCTGTTTATGTTGAAGAAGGTGACACATCAAAGAAATACTTATTGAGGTCCAGTGTTGTTGGTGCTGCATGTAACAGGATTAACAAGGCTGCCCATAGAAATCCTCACAATTTTGTAAAGAACATTGAATCTATTCATAAGTTAGCAGAACAGATAGAAAGGCAGGAAGGTATTGACTTGAACATTGCTGATATATCAAGAGTTGTTCGTGACCCAACTGTTGTTAAAACTAAAGGCGCCCCTCGAAAGAATAAGAAAATGAAAAAAAGGAAATGTTCTTACTGTAAACGTCCAGGCCACACAGTTAGGACATGCACTAAATATGCTACTCGCGATCAGTTGGACACAGTTATTGAAGAGGAATCATCTGTTGAGACTGATGAAGATTCAAGAAATGAAAGTGTAATTTTACTCTTGACATTGTTTAAATACATTTTTAAAAAATAG 1374 0.3712 MRQLVCNRAGERSEKHLNRTDRIREAKALTGTNCNARLRISLDYIRRKWRVGIFEPAHNHELTPASMIHLLPAYRGLSVADKAQVDGLHHYGVRTCHIMGLIMGQKGGYSDLRFCKKDLYNHIDKENRAKIEDGDAFVALCYLQINSFIKRYVQSKNSLVDFLHNFERALNEYRHDELTSDFKSKYTQPVMTTALERYEVQASNVYMRNKFFDVRKQIEKVVAINVFERTNVGNVITMKMNKFGTPDSTYIVMLDKSDGNFVCDCRMFESCGLPCSHIFSAMKHEQVESIPASLILKRWTKLAKVEHISSVYVEEGDTSKKYLLRSSVVGAACNRINKAAHRNPHNFVKNIESIHKLAEQIERQEGIDLNIADISRVVRDPTVVKTKGAPRKNKKMKKRKCSYCKRPGHTVRTCTKYATRDQLDTVIEEESSVETDEDSRNESVILLLTLFKYIFKK. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05623 457 ProSiteProfiles Zinc finger SWIM-type profile. 250 286 IPR007527 GO:0008270
Seca11g05623 457 SUPERFAMILY Retrovirus zinc finger-like domains 389 418 IPR036875 GO:0003676|GO:0008270
Seca11g05623 457 PANTHER OS01G0519700 PROTEIN 156 412 - -
Seca11g05623 457 SMART 26again6 261 288 IPR006564 GO:0008270
Seca11g05623 457 Pfam FAR1 DNA-binding domain 2 63 IPR004330 -
Seca11g05623 457 Gene3D - 378 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05623 Seca-Chr11 155598787 155603853 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05623 FAR1 2.4e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05623 - - tpra:123910662 249.21