Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05622 ATGGCGCCGAGCATCCAACTAACTCCCGCCGGCGCCGGCGCCGGCGAAGATTCCGGCGACCTCGAGGACGTGAGACTCCTGGATTCCTACGAGAAATACGACCACGACGACAACACGAGGCGGATTCAGGTCAGAATCTCCGGCATGACATGCGCCGCTTGCTCCAACTCCGTTGAGGCGGCTCTTAAGTCCGTTGACGGCGTCATCGAAGCATCTGTTGCCCTGCTTCAGAACAAAGCCGACGTCGTTTTCAACCGAAGCCTTGTCAAGGATGAAGACATTAAGAATGCGATTGAAGATGCAGGGTTTGAAGCGGAGATTTTACCCGAGCCCGGTTCACTTGGACCGGACCGGCGTGGTGACGGCGCAGTCTTGGTGGGGCAGTTCACGATTGGGGGAATGACGTGTGCGGCGTGTGTGAATTCCGTGGAGAGCATTCTGAGGAACCTCTCGGGAGTGAAAAAAGCAGTGGTGGCTTTGGCTACTTCGTTGGGTGAAGTTGAGTATGATCCCAATGTGATTAGCAAGGATGATATTGTTACTGCAATTGAAGATGCAGGTTTCGAGGCTTCGTTTGTGCAGAGTAGTGGGCAGGACGAGGTGGTTTTGGGGGTTGTTGGTGTGTATTCTTTGGTTGATGCTCAAGTTTTGGAAGGCATGCTCAGTGGGATGAAAGGGGTGAGGCAGTTCCGGTTTGATCCTGTGTTGAATGAACTGGATGTTGTGTTTGACCCTGAAGTTATTAATTCTAGATCGTTGGTTGATGGGATCCATGTGGGAAGCAATGGCAAGTTTAAGTTACATGTTAGAAACCCTTATGCCAGAATGGCTTCTAAAGATGTTTCAGAGACCTCAGCTATGTTTCGACTTTTTATTTCCAGCTTGCTTCTTAGTATTCCTCTCTTCTTCATGGGGGTAGTTTGTCCTCATATACCATTGGTATACTCCTTATTACTTTGGAGATGTGGGCCTTTCCTCATGGGTGATTGGCTGAAGTGGGCATTGGTGAGTCTTATCCAATTTGTGGTTGGGAAGCGCTTCTACATAGCAGCTATTAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACAACAGCTTCTTATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTCACTGGATTTTGGTCTACAACATACTTTGAAACCAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCCATTAAGAAGTTAGTGGAACTTGCTCCTGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAAATCTATTGAGGAAAGGGAAATAGATTCCTTGCTCATTCAACCTGGTGACACATTGAAAGTTCTTCCTGGCACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACCGGTGAATCTATACCTGTTTCGAAGGAGGTCAATGCATCTGTTATTGGAGGTACGATCAATTTGCATGGTGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGCTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATACAAAAGTTTGCTGATTATGTAAGTATTGTGGTCATACTCTTTGGTTTGCAGGTAGCAAGCATATTTGTTCCTACAATTGTGGCTTTGTCATTATTGACACTATTGTGTTGGTATATTGCTGGGGCTCTTGGAGCTTATCCTGAAGAATGGCTGCCTGAAAATGGAAATCACTTTGTGTTTGCCCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCCTGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGAGTTGGGGCTAACAATGGTGTGTTAATTAAAGGAGGAGATTCCTTGGAAAGGGCTCAGATGGTGAAGTATGTTGTATTTGATAAAACAGGCACTTTAACTCAGGGGAAAGCCACTGTAACTGTTGCCAAGGTGTTCACAGGAATTGACCGTGGAGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACATCCACTGGGAAAAGCGATATTACAATATGCCCGCCATTTTCATTTCTTTGATCCAACCAATGGTACCCAGAATAATGCCAAGGAGTCAGGGTGGCTTTATGATGTCTCTGACTTCTCTGCTATTCCGGGAAAGGGTGTGCAGTGCTTTATAAATGGAAAGCGGATTTTGAGTTGCTTACTTGAGGCAGTATGTCCTGAACAGGTTGGTAACAGGAAGCTGCTGGTGGAAAGTGGCATTGATATTTCTACCGAAGTGGAAAATTTTGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTAGTAGCATTTGATGATGTATTAACTGGAGTCTTAGGGGTCGCAGACCCACTAAAGCGAGAAGCTTCTGTTGTTATAGAGGGCCTCAAGAAAATGGGAATCATACCTGTTATGGTCACAGGAGATAACTGGAGAACTGCTCGAGCTGTTGCCAAGGAGGTTGGCATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCAGATGTTGTTCGTTCATTCCAGAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCTGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATAGCAATTGAAGCTGCTAACTATGTGTTGATGAGAGATAATTTGGAAGATGTGATCACAGCCATTGATCTTTCTAGAAAAACATTTTCTCGCATTCGATTGAATTATGTCTTCGCAATGGCCTACAATGTTGTTGCTGTACCAGTTGCTGCTGGGGTTTTATTTCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCGTCCGTTAGTGTTGTATGTTCTTCTTTGCTTCTTAGAAGATATAGAAAACCCAGACTTACTACAATACTTGAAATAGTTGTAAATTAA 3036 0.4489 MAPSIQLTPAGAGAGEDSGDLEDVRLLDSYEKYDHDDNTRRIQVRISGMTCAACSNSVEAALKSVDGVIEASVALLQNKADVVFNRSLVKDEDIKNAIEDAGFEAEILPEPGSLGPDRRGDGAVLVGQFTIGGMTCAACVNSVESILRNLSGVKKAVVALATSLGEVEYDPNVISKDDIVTAIEDAGFEASFVQSSGQDEVVLGVVGVYSLVDAQVLEGMLSGMKGVRQFRFDPVLNELDVVFDPEVINSRSLVDGIHVGSNGKFKLHVRNPYARMASKDVSETSAMFRLFISSLLLSIPLFFMGVVCPHIPLVYSLLLWRCGPFLMGDWLKWALVSLIQFVVGKRFYIAAIRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSIEEREIDSLLIQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESIPVSKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVSIVVILFGLQVASIFVPTIVALSLLTLLCWYIAGALGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLERAQMVKYVVFDKTGTLTQGKATVTVAKVFTGIDRGEFLTLVASAEASSEHPLGKAILQYARHFHFFDPTNGTQNNAKESGWLYDVSDFSAIPGKGVQCFINGKRILSCLLEAVCPEQVGNRKLLVESGIDISTEVENFVIELEESAKTGILVAFDDVLTGVLGVADPLKREASVVIEGLKKMGIIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAVPVAAGVLFPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEIVVN. 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05622 1011 Gene3D - 765 816 IPR023299 GO:0000166
Seca11g05622 1011 Gene3D - 666 762 IPR023299 GO:0000166
Seca11g05622 1011 FunFam Copper-exporting P-type ATPase A 125 193 - -
Seca11g05622 1011 MobiDBLite consensus disorder prediction 1 20 - -
Seca11g05622 1011 Pfam haloacid dehalogenase-like hydrolase 655 899 - -
Seca11g05622 1011 NCBIfam copper ion binding protein 128 190 IPR006122 GO:0005507
Seca11g05622 1011 NCBIfam copper ion binding protein 42 105 IPR006122 GO:0005507
Seca11g05622 1011 Gene3D - 39 110 - -
Seca11g05622 1011 Pfam E1-E2 ATPase 431 638 - -
Seca11g05622 1011 FunFam Copper-exporting P-type ATPase A 38 108 - -
Seca11g05622 1011 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Seca11g05622 1011 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Seca11g05622 1011 SUPERFAMILY HMA, heavy metal-associated domain 128 196 IPR036163 GO:0046872
Seca11g05622 1011 FunFam Copper-exporting P-type ATPase 670 818 - -
Seca11g05622 1011 Gene3D - 626 942 IPR023214 -
Seca11g05622 1011 NCBIfam HAD-IC family P-type ATPase 783 968 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g05622 1011 NCBIfam HAD-IC family P-type ATPase 401 567 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g05622 1011 SUPERFAMILY HAD-like 658 991 IPR036412 -
Seca11g05622 1011 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 22 1006 - -
Seca11g05622 1011 SFLD C1.7: P-type atpase like 641 937 - -
Seca11g05622 1011 Gene3D - 127 192 - -
Seca11g05622 1011 NCBIfam heavy metal translocating P-type ATPase 362 994 IPR027256 GO:0006812|GO:0016020|GO:0019829
Seca11g05622 1011 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Seca11g05622 1011 CDD P-type_ATPase_Cu-like 289 981 - -
Seca11g05622 1011 Gene3D - 416 538 - -
Seca11g05622 1011 SFLD p-type atpase 641 937 IPR044492 -
Seca11g05622 1011 ProSiteProfiles Heavy-metal-associated domain profile. 40 106 IPR006121 GO:0046872
Seca11g05622 1011 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Seca11g05622 1011 FunFam Probable copper-transporting ATPase HMA5 775 942 - -
Seca11g05622 1011 SUPERFAMILY HMA, heavy metal-associated domain 35 110 IPR036163 GO:0046872
Seca11g05622 1011 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 659 673 - -
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 810 821 - -
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 885 904 - -
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 908 920 - -
Seca11g05622 1011 PRINTS P-type cation-transporting ATPase superfamily signature 832 842 - -
Seca11g05622 1011 PRINTS H+-transporting ATPase (proton pump) signature 857 873 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g05622 1011 PRINTS H+-transporting ATPase (proton pump) signature 885 901 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g05622 1011 PRINTS H+-transporting ATPase (proton pump) signature 916 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g05622 1011 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
Seca11g05622 1011 CDD HMA 128 191 IPR006121 GO:0046872
Seca11g05622 1011 FunFam Copper-transporting ATPase 1, putative 416 538 - -
Seca11g05622 1011 CDD HMA 43 106 IPR006121 GO:0046872
Seca11g05622 1011 SUPERFAMILY Calcium ATPase, transmembrane domain M 381 974 IPR023298 -
Seca11g05622 1011 ProSitePatterns E1-E2 ATPases phosphorylation site. 661 667 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05622 Seca-Chr11 155573725 155579619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05622 1 1008 Primary Pumps ATPases AT5G44790 72.665 0.0 1473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05622 K17686 - gmx:100798164 1651.34