Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05604 ATGGAATTTGATTCCCTTGAGGATGTTAAAGAGTTATACACATCATTTGCTAAGAAAACGGGTTTTGGTATTCGTACTCGTTCAACTAAAGAGAATTTTTGTATACTTGTATGTTCTAATGAAGGCAAGCATATAGTCAAGAGTGGTGGGGAAGAATGTAATGTTTGCATGGGAAAAACAAAGAAAAAGTGCTCAACTTCAAGAACAGATTGTAAGGCATCACTTGTTGTTTCAAAAGCATGGAAGAGAAGCAAATGGATTATCAAAAGCTTTGATAATGTTCATAATCATGCCATGATCAGCCCTAAGAGTGTGAGCTATCTTCGATGTCATAAGAAAATGAGCAAAGCGGCTAAAAACCTTGTTGAGAAGTTTGATGAAGAAGGGGTACCTACAGGAAAGGTTGCCACAATGTTTAATGGTGGAGATATATCTTTCTCTAACAGGGATTGCTGGAATCATCTTAGAAATGTTAGAAAAAGAAATCTTGATATTGGAGATGCCCAAGCTGTTTTGAACTTTTGTAAAGAAAAGCAAGCTGAAAATTCAAATTTCTTTTATGCAATACAATGTGATGATGAAGATAGAATGATAAAAAATTTTTGGGTAGATGCAAGATCAAGAATGGCGTATAAGAATTTTGGAGATGTCATTACATTTGATACAACATATAGGACCAACAAGTACAACGATTTTGAAGAAGACTGGGAGCGTATAATGATTGCTTATGATTTGAAGAAGAATGAATGGCTTCAAGGCTTATACAATATAAGAGATTCATGGGTGCCTGTTTATAATAGAGGAACCTTTTTTGGTGGGATGAACACTACACAGAGGAGTGAGAGTATGAATGCTTTTTTTGATGCCTTTGTTAATTCTTCAACAACACTACGAGATTTTGTAGTGAAGTTTGACAAGGCAATGGATAGTCGCTGTGAAAAAGAAAGAAGAGAAGATTTTGAATCCAGGCATCGATCTCGTCTCTTAGATATTAAATCAAAGATTGGGGAGCATGTTGCATCAATTTATACAAGAGCCATTTTTGGGAAGTTTCATGATGAACTGGCTAAGATTAACCAATTCACAAAGGAGAAGATTGAAAAGAATGGGTCTCAGTATACATACAGGGTATCCAACTGTTTTGAGTCTCGGGACACAGTTACGGTTTGTGTGGATCTTGATACAAAGGTTGTTAATTGCAGTTGCCAACTATATGAATTTTTGGGGATTTTATGTAGACATATCTTGGTTATTTTTCAAGCAAAAAATATCATTGAAATTCCAAGTAATTATATTTTAGAGCGTTGGACAAAAGACGCTAATAGGGGCATTGGATTTAATGAAAATGGAGCAACTTCTTCATGTGATGTTAATAATTCAGTAACTCTGCGAAGTATACATGTGCATAGTCAAGCTAGTTTATTATCTGATCTTGCTGCAAAATCTGAGAAGTTATACATGTTCATATCATCTGAAATGGAGCAAACATACAAAAGAGCTATAGAAATGGAATCTGAAATGTGCCTTGAAAATGAGGTAATTTCCCAAGAGGCAAGTTTTCATAATATGTTATGTGAACAGGTAAGTTTATCTCCTGAGTCAAATATTAGAGATCCGCTCATGTCACAAACTAAAGGAAGAAAAAAAGATGTAATCAAAGCGACTCAACAGGGAAGGATCAAAAGCAGTCTAGAGTTGTCAATAAATCGATCTCTAGTAAAAAGAAGATCATGTCAAGTATGTGGACAACATGGTCACAATCGACGTAGTTGTAAGCAAAAGATAAATGATGAATCTATTGATCAACCTACTTGA 1815 0.3499 MEFDSLEDVKELYTSFAKKTGFGIRTRSTKENFCILVCSNEGKHIVKSGGEECNVCMGKTKKKCSTSRTDCKASLVVSKAWKRSKWIIKSFDNVHNHAMISPKSVSYLRCHKKMSKAAKNLVEKFDEEGVPTGKVATMFNGGDISFSNRDCWNHLRNVRKRNLDIGDAQAVLNFCKEKQAENSNFFYAIQCDDEDRMIKNFWVDARSRMAYKNFGDVITFDTTYRTNKYNDFEEDWERIMIAYDLKKNEWLQGLYNIRDSWVPVYNRGTFFGGMNTTQRSESMNAFFDAFVNSSTTLRDFVVKFDKAMDSRCEKERREDFESRHRSRLLDIKSKIGEHVASIYTRAIFGKFHDELAKINQFTKEKIEKNGSQYTYRVSNCFESRDTVTVCVDLDTKVVNCSCQLYEFLGILCRHILVIFQAKNIIEIPSNYILERWTKDANRGIGFNENGATSSCDVNNSVTLRSIHVHSQASLLSDLAAKSEKLYMFISSEMEQTYKRAIEMESEMCLENEVISQEASFHNMLCEQVSLSPESNIRDPLMSQTKGRKKDVIKATQQGRIKSSLELSINRSLVKRRSCQVCGQHGHNRRSCKQKINDESIDQPT. 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05604 604 ProSiteProfiles Zinc finger SWIM-type profile. 387 423 IPR007527 GO:0008270
Seca11g05604 604 SMART 26again6 398 425 IPR006564 GO:0008270
Seca11g05604 604 Pfam SWIM zinc finger 397 423 IPR007527 GO:0008270
Seca11g05604 604 ProSiteProfiles Zinc finger CCHC-type profile. 578 593 IPR001878 GO:0003676|GO:0008270
Seca11g05604 604 Pfam FAR1 DNA-binding domain 12 99 IPR004330 -
Seca11g05604 604 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 231 498 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05604 Seca-Chr11 155314575 155316722 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05604 FAR1 4.5e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05604 - - mtr:112420966 710.679