Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca11g05586 | ATGCAAGCTCTTCAGATTCAACCACAACCCACCCTTCGCCCTTCTCCTCTCGACCCACTTCGCAAATCTTCCAATGCCGCCAAAAGGAGAGGCGCCACCGGCGGCAACTCCAAGAGGAACTTTTTCGTGTCCGCAGCCGTGACCACCGCTGCTCCGAAGCGGCAAAAGGACCCCAAGAAGCGTGTGGTGATCACCGGCATGGGTCTGGCCTCGGTGTTCGGCAACGACGTCGATCGTTACTATGATAAGCTTCTCGCTGGCGAGAGTGGGATCACCCCTATCGACCGGTTCGATGCTTCCAAGTTCCCGACCCGGTTCGGCGGTCAGATCCGTGGCTTCAGCGCTGAGGGATACATCGACGGGAAGAATGACCGGAGACTCGACGATTGCCTTCGGTACTGCATTGTCGCCGGCAAGAAGGCCCTCGAAAATGCCGACCTCGCTGCTGATAAGCACTCTAAGATCGATAAGGAACGTGCTGGTGTTCTTGTTGGGTCAGGGATGGGTGGTTTGACGGTGTTTTCTGATGGTGTTCAGGCTTTGATTGAGAAAGGGCATAGAAAGATAACACCTTTTTTCATTCCTTATGCTATTACTAACATGGGTTCGGCTTTGCTTGGAATTGATCTTGGTTTCATGGGTCCGAACTATTCCATTTCCACTGCGTGTGCTACCTCTAATTATTGCTTTTATGCTGCTGCAAACCACATTCGTAGAGGGGAGGCTGATCTGATGATAGCTGGTGGGACTGAAGCTGCTATTATTCCTATTGGGTTAGGAGGTTTTGTGGCGTGCAGGGCCCTTTCTCAGAGAAATGATGACCCTAAAACTGCTTCCAGGCCTTGGGACAAAGACCGTGATGGCTTTGTGATGGGTGAAGGTGCTGGAGTTCTGGTAATGGAGAGCCTGGAACATGCCATGAAACGAGGTGCACCTATCATTGCTGAATACTTGGGTGGTGCTGTTAACTGTGATGCTTATCACATGACTGATCCAAGATCTGATGGACTTGGTGTGTCTTCATGCATTCAGAGCAGCCTTGAAGATGCTGGTGTGTCACCTGAGGAGGTGAACTACATAAATGCACATGCAACTTCCACTCTTGCTGGTGACTTGGCAGAGATCAATGCTATTAAAAAGGTTTTCAAGGACACTTCTGGCATCAAGATTAATGCTACCAAGTCTATGATTGGGCACTGCCTTGGTGCAGCTGGGGGTTTGGAAGCTATTGCCACTGTGAAAGCCATAACAACAGGATGGCTGCATCCAACAATCAATCAATTTAATCCAGAACCTGCTGTTGATTTTGATACGGTGGCAAATGTCAAGCAGCAGCATGAAGTTAATGTTGGTAAGTTTTCCCACCTTCTCTTCTCTCTCTCTTTCTCTCATCTGAAAATGGACGTCACCGAGGAAGTTAGGGCAGCACACAAGCGAGAATTCGCCGATTTCTTAGATCAAGATGTGGGAAAGGGCATATACATGGACGAGATCAAAGCTCTCATCAACCATAAGCGCCGCCGCCTCATCGTCAACATCTCCGATCTCCATAACTTCCGCGACTTGGGTAACAGGATTCTGAGGAATCCAAGTGAGTACTTACAATCGTTCTGCGATGCGGTTACTGATGCGGTTCGTGCTATTGATCCCAAGTATTTGAAGGAAGGGGAACAAGTGCTTGTGGGATTTGAAGGCCCTTTTGTTTCTCGTCGAGTCACGCCCAGGGAACTTCTATCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGCATTATCACCAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTTCATTTCTGCCCCACCACGGGAAACTTCACTACTCGTGAATATCGAGATATTACATCCAATATGGGTTTGCCCACAGGGTCCGTTTATCCTACAAGGGATGAAAGTGGTAACTTACTTGTGACTGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAAAATTCTGCCCCTGGTCAGCTCCCAAGAACAGTGGATATCATAGTAGAGGATGATCTCGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATAGTGGGGACATATAAGGCTCTTCCTGGGAAAAGCAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAACGTTTCTCTTCTCAACAAAGAGGCTAATGCACCAATCTATAGTCCTGAAGACCTCAAAAACATAAAAAAGATAGCTGAAAGAGATGATACATTTGATCTGCTTGGTAATTCACTTGCACCTTCTATATATGGGCATTCTTGGATAAAGAAAGCAGTGGTTTTGTTGATGCTTAGCGGAGTGGAGAAGAACTTAAAGAATGGAACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGATCCCTCTGTTGCCAAGTCTCAACTCTTAAGAGCTATTATGAATATTGCTCCCTTGGCCATATCAACAACAGGTCGGGGTTCTTCTGGGGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGGGAAAGAAGACTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGCGTTGTCTGCATTGATGAATTTGACAAAATGAATGATCAAGATCGTGTGGCTATTCATGAAGTAATGGAACAGCAAACCGTAACTATTGCTAAAGCTGGTATCCATGCATCACTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGATCGATCACTGACCCCGACCAAAAATATTGGACTCCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTCATTGTGTTGGATCAAATGGATCCTGATATTGATCGTCATATATCAGAGCATGTTCTTCGTATGCATCGATTTCGTTCTGCCATTGATGGAGGTGAAGCGGCACTTGATGGGAGCTCAAGATATGGAAGAGAAGATGAAGCTGATACGGACTCATCTGTCTTCGTCAAATACAACAGAATGCTACATGGGAAGAAAACTGAAAGAGGTCGCAAACGTGATACGCTTACAATTAAGTTTCTTAAAAAGTATATCCATTATGCCAAGCATAGGATTCAACCTGAACTGACTGATGAGGCATCTGATCAAATTGCCACAGCATATGCTGAGCTCAGAAATGCAAGTTCAAATGCAAAGACTGGAGGAACGCTCCCCATAACTGCCAGAACTTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGACGCTGCTTTGAAGGTTCTTAATTTTGCAATATATCACAAAGAACTGACAGAAATGGAGGAGCGTGAGCATGAGAGGGAGAGAGAACTGGAGAGGAAGCGTAGGGCTGATGGTGAAAATGATGATCCGGATAGTGCTCCAAGAAAGAGAAGAGGGTCAACATCAGATGCTATGGAAGTAGATGATACATCAGCACCCCAATCAGCTGCCAGTCTCACTCCTGAAAGAATCGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGTGCCAACCGCTTGGATCTCATATCTATTGCAGACATAGAGGGTGTTATCAACAGGGCAGATTCCACTTACAGCTCGGCAGATATATTACTGCTATTAGAGAAATTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTACATATGATATCATAA | 3717 | 0.456 | MQALQIQPQPTLRPSPLDPLRKSSNAAKRRGATGGNSKRNFFVSAAVTTAAPKRQKDPKKRVVITGMGLASVFGNDVDRYYDKLLAGESGITPIDRFDASKFPTRFGGQIRGFSAEGYIDGKNDRRLDDCLRYCIVAGKKALENADLAADKHSKIDKERAGVLVGSGMGGLTVFSDGVQALIEKGHRKITPFFIPYAITNMGSALLGIDLGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGTEAAIIPIGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVLVMESLEHAMKRGAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIQSSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKDTSGIKINATKSMIGHCLGAAGGLEAIATVKAITTGWLHPTINQFNPEPAVDFDTVANVKQQHEVNVGKFSHLLFSLSFSHLKMDVTEEVRAAHKREFADFLDQDVGKGIYMDEIKALINHKRRRLIVNISDLHNFRDLGNRILRNPSEYLQSFCDAVTDAVRAIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGNFTTREYRDITSNMGLPTGSVYPTRDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGTYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVVLLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRFRSAIDGGEAALDGSSRYGREDEADTDSSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASDQIATAYAELRNASSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKVLNFAIYHKELTEMEEREHERERELERKRRADGENDDPDSAPRKRRGSTSDAMEVDDTSAPQSAASLTPERIEAFNSLFGQHMRANRLDLISIADIEGVINRADSTYSSADILLLLEKLQDDNRVMIVDGMVHMIS. | 1239 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca11g05586 | 1238 | FunFam | DNA helicase | 601 | 655 | - | - | |
Seca11g05586 | 1238 | SUPERFAMILY | Thiolase-like | 60 | 311 | IPR016039 | GO:0016746 | |
Seca11g05586 | 1238 | Pfam | Beta-ketoacyl synthase, N-terminal domain | 60 | 306 | IPR014030 | - | |
Seca11g05586 | 1238 | ProSiteProfiles | Ketosynthase family 3 (KS3) domain profile. | 59 | 469 | IPR020841 | - | |
Seca11g05586 | 1238 | Pfam | MCM OB domain | 575 | 705 | IPR033762 | - | |
Seca11g05586 | 1238 | Gene3D | - | 575 | 705 | IPR012340 | - | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 908 | 920 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 935 | 943 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 884 | 897 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 856 | 870 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 796 | 811 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 471 | 1132 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | SUPERFAMILY | Nucleic acid-binding proteins | 479 | 725 | IPR012340 | - | |
Seca11g05586 | 1238 | Gene3D | - | 467 | 565 | - | - | |
Seca11g05586 | 1238 | SMART | Beta-ketoacyl synthase | 62 | 447 | IPR020841 | - | |
Seca11g05586 | 1238 | ProSitePatterns | MCM family signature. | 864 | 872 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
Seca11g05586 | 1238 | CDD | MCM3 | 758 | 1107 | - | - | |
Seca11g05586 | 1238 | Pfam | MCM P-loop domain | 743 | 965 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Seca11g05586 | 1238 | SUPERFAMILY | Thiolase-like | 273 | 454 | IPR016039 | GO:0016746 | |
Seca11g05586 | 1238 | SMART | AAA_5 | 797 | 950 | IPR003593 | GO:0016887 | |
Seca11g05586 | 1238 | Gene3D | - | 737 | 1129 | IPR027417 | - | |
Seca11g05586 | 1238 | ProSiteProfiles | MCM family domain profile. | 755 | 961 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | MobiDBLite | consensus disorder prediction | 1155 | 1169 | - | - | |
Seca11g05586 | 1238 | Pfam | MCM AAA-lid domain | 1022 | 1105 | IPR041562 | - | |
Seca11g05586 | 1238 | Gene3D | - | 601 | 655 | - | - | |
Seca11g05586 | 1238 | SMART | mcm | 570 | 1109 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Seca11g05586 | 1238 | Pfam | MCM N-terminal domain | 478 | 550 | IPR027925 | - | |
Seca11g05586 | 1238 | ProSitePatterns | Ketosynthase family 3 (KS3) active site signature. | 214 | 230 | IPR018201 | GO:0004315|GO:0006633 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 647 | 661 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 673 | 685 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 1096 | 1111 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 957 | 967 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Seca11g05586 | 1238 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 924 | 934 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
Seca11g05586 | 1238 | Coils | Coil | 1110 | 1133 | - | - | |
Seca11g05586 | 1238 | FunFam | DNA helicase | 471 | 570 | - | - | |
Seca11g05586 | 1238 | Gene3D | - | 39 | 464 | IPR016039 | GO:0016746 | |
Seca11g05586 | 1238 | NCBIfam | beta-ketoacyl-ACP synthase II | 60 | 450 | IPR017568 | GO:0006633|GO:0016747 | |
Seca11g05586 | 1238 | Pfam | Beta-ketoacyl synthase, C-terminal domain | 315 | 426 | IPR014031 | - | |
Seca11g05586 | 1238 | CDD | KAS_I_II | 60 | 451 | IPR000794 | - | |
Seca11g05586 | 1238 | MobiDBLite | consensus disorder prediction | 1115 | 1169 | - | - | |
Seca11g05586 | 1238 | FunFam | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 36 | 468 | - | - | |
Seca11g05586 | 1238 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 765 | 1119 | IPR027417 | - | |
Seca11g05586 | 1238 | MobiDBLite | consensus disorder prediction | 1115 | 1154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca11g05586 | Seca-Chr11 | 155045142 | 155059193 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca11g05586 | 467 | 1041 | Core DNA Replication Machinery Family | AT5G46280 | 82.322 | 0.0 | 974 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca11g05586 | K02541 | - | jre:108990186 | 1345.87 |