Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05578 ATGGAGGAGTGTAAAAAGAGCAGAGGAAAACAAAAGATAGAGATTAAAGAGATCAAGGAAAGCAAAAATCTTTACAATACTTTTGTAAAGCGAAAATCTGGCATTTTCAAGAAGGCCAGTGAATTATCAACACTTTGTGGGGCTAGGATTGATATACTCATGTTTTCGCCATGTGAAAGACCATTCTGTTATGGGAACCCTTCTCTTCAGTCGATGACAAGGACTGGTTTAGATGAAGGAAACCCTTTAGAAGGTGGCAACGATGATCAGCTTGTAGAGGATGCCGAGAGACCGGAGATCAAAGAACTCAATGAAAAAAATGATGCACTCTTTGATCAATTATATGTGGAGAAAGAAGGAGAGAAAAAACTAAAGGGGATTTTGAAGAATATGGATAGCAATGATTGGTGGGAGGCCAAACTGCAAGATTTTAACTATCATGAGGATGCCAAAGCAATGGAGGAATCTTTGACGGAACTCCGAAACAAATTAACAAATGAACTTTCAATCAAAGAAAATACTTCTAATGGTAAGGGCTCTTCAACTTAA 549 0.3789 MEECKKSRGKQKIEIKEIKESKNLYNTFVKRKSGIFKKASELSTLCGARIDILMFSPCERPFCYGNPSLQSMTRTGLDEGNPLEGGNDDQLVEDAERPEIKELNEKNDALFDQLYVEKEGEKKLKGILKNMDSNDWWEAKLQDFNYHEDAKAMEESLTELRNKLTNELSIKENTSNGKGSST. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05578 182 Gene3D - 21 83 IPR036879 GO:0003677|GO:0046983
Seca11g05578 182 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Seca11g05578 182 Coils Coil 147 167 - -
Seca11g05578 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 64 IPR002100 GO:0003677|GO:0046983
Seca11g05578 182 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Seca11g05578 182 PANTHER MADS BOX PROTEIN 10 166 - -
Seca11g05578 182 SUPERFAMILY SRF-like 9 73 IPR036879 GO:0003677|GO:0046983
Seca11g05578 182 CDD MADS 9 67 - -
Seca11g05578 182 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Seca11g05578 182 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Seca11g05578 182 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05578 Seca-Chr11 154928737 154929285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05578 4 143 Type I MADS-box Gene Family AT5G60440 39.161 7.60e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05578 SRF-TF 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05578 - K12412 gmx:102665718 142.51