Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05575 ATGGCGAAAAAGGCTAAAGGGTCTCACTCTCACTCTGCTTCTTCGGCCTCTGCCTCTGCCTCTGCCCCCTCTGGAAGGAATGGTCAAAACACAGACAAACTAGTGTTGAGGATTAAATCAAATGAGGGAATGAAGAGATCGGTGCGGCAGACTAAGTCAAGGCAGAAACCCAAAACAAAGCAAAAAAAGAACAAACAAAGGATTGATGCTAAGAAGCCAAAGAAACCTCCTACTGCCTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGCGGAGAGAAATGGAAAACAATGACTTATGAGGTTAGTTTTCTTCTGTATCTTCTCTTATCTTATTTACCCTGA 396 0.4217 MAKKAKGSHSHSASSASASASAPSGRNGQNTDKLVLRIKSNEGMKRSVRQTKSRQKPKTKQKKNKQRIDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEVSFLLYLLLSYLP. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05575 131 MobiDBLite consensus disorder prediction 8 36 - -
Seca11g05575 131 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 73 131 IPR009071 -
Seca11g05575 131 SMART hmgende2 72 126 IPR009071 -
Seca11g05575 131 SUPERFAMILY HMG-box 58 118 IPR036910 -
Seca11g05575 131 MobiDBLite consensus disorder prediction 1 76 - -
Seca11g05575 131 Pfam HMG (high mobility group) box 73 118 IPR009071 -
Seca11g05575 131 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 45 117 IPR031061 -
Seca11g05575 131 Gene3D High mobility group box domain 44 119 IPR036910 -
Seca11g05575 131 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05575 Seca-Chr11 154840116 154844330 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca11g05575 HMG_box 6.1e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05575 - - gmx:100305607 152.14