Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05571 ATGGAGGAGGAGGGTAAAAAAACCAAAGGAAAACAAAAGATAGAGATTAAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAATATGGCGTTCACAAGAAGGCTTGTGAGTTATCAACACTTACCGGGGCTCGGGTTGATATACTCATGTTTTCTCCATGTGGAAGATCATTCTCTTATGGGGATCCTTCTCTCCGATTGTTGACAAGGACAATTTCAGACGATGAGCACCCTTTAGAAGGTGTCAACTATGATCAACTTGTAGAGGATCACAAGAGATCGAAGATCGATGAACTCAACAAAAAACATGATGCACTTCAAGATCAAGTGTATGTTGAGAAAGCACGTGAGAAAGAACTAAAGGACATATTGAAGACAAGGAAAAACGATGGCTGGTGGGAGGCCAAAGTGCAAGGTCATAGTTGTGAACATGCTGAGGAAATGGAAGCAAGTCTTTTAGAATTACATGAAAATTTGTCAAATGAACCTTCAATCAAGTGTGGAGGAAATTCTTCTCATGGTATGGTCTCTTTAACTTAA 555 0.391 MEEEGKKTKGKQKIEIKKIDKANDLSSTFAKRKYGVHKKACELSTLTGARVDILMFSPCGRSFSYGDPSLRLLTRTISDDEHPLEGVNYDQLVEDHKRSKIDELNKKHDALQDQVYVEKAREKELKDILKTRKNDGWWEAKVQGHSCEHAEEMEASLLELHENLSNEPSIKCGGNSSHGMVSLT. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05571 184 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 Coils Coil 147 167 - -
Seca11g05571 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 CDD MADS 10 66 - -
Seca11g05571 184 Coils Coil 94 114 - -
Seca11g05571 184 Gene3D - 22 84 IPR036879 GO:0003677|GO:0046983
Seca11g05571 184 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 SUPERFAMILY SRF-like 10 73 IPR036879 GO:0003677|GO:0046983
Seca11g05571 184 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Seca11g05571 184 PANTHER MADS BOX PROTEIN 11 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05571 Seca-Chr11 154792321 154792875 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05571 2 177 Type I MADS-box Gene Family AT3G04100 33.152 6.10e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05571 SRF-TF 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05571 - K12412 gmx:102665718 162.925