Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05565 ATGGAGGAGGAGGGTAAAAAAACCAAAGTAAAACAAAAGATAGAGATTGAGAAGATTGATAAAGCAAATGATCTTTCTAGTACTTTCGCAAAGCGAAAGTATGGCATTCACAAGAAGGCTTGTGAGTTATCAACACTTTGTGGGGATGGGGTTGATATATTCATGTTTTCTCCATGTGGAAGATCATTCTGTTATGGGGATCCTTCTCTGCGATTGTTGACAAGGACAATTGTAGATGCTGAGCACCCTTTAGAAGGTGTCAACTGTAATCAACTTGTAGAGGATCACAAGAGATCAGAGATCGACGAACTCAACAAAAAACATAATGCACTTCAAGATCAATTTCATGGTGAGAAAGCACGTGAGAAAAAACTAAAGGACATATTGAAGCAGAGGAAAAATGATGGCTGGTGGGAGGTCAAAGTGCAAGCTCTTAGTTGTGAACATAATGAGAAAATAGAAGCAAGTCTTTTAGAATTACATGAAAAATTGTCAAATGAACTTTCAATCAAGTGTGGAGGAAATGCTTCTCATGGTATGGTCTCTTCAATTAAATTTTGCCTTAGCTTCGATTAA 576 0.3733 MEEEGKKTKVKQKIEIEKIDKANDLSSTFAKRKYGIHKKACELSTLCGDGVDIFMFSPCGRSFCYGDPSLRLLTRTIVDAEHPLEGVNCNQLVEDHKRSEIDELNKKHNALQDQFHGEKAREKKLKDILKQRKNDGWWEVKVQALSCEHNEKIEASLLELHEKLSNELSIKCGGNASHGMVSSIKFCLSFD. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05565 191 Coils Coil 94 121 - -
Seca11g05565 191 Gene3D - 22 103 IPR036879 GO:0003677|GO:0046983
Seca11g05565 191 PANTHER MADS BOX PROTEIN 11 164 - -
Seca11g05565 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 63 IPR002100 GO:0003677|GO:0046983
Seca11g05565 191 SUPERFAMILY SRF-like 11 87 IPR036879 GO:0003677|GO:0046983
Seca11g05565 191 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Seca11g05565 191 CDD MADS 11 63 - -
Seca11g05565 191 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Seca11g05565 191 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Seca11g05565 191 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Seca11g05565 191 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05565 Seca-Chr11 154643710 154644285 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05565 2 177 Type I MADS-box Gene Family AT3G04100 31.522 9.87e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g05565 SRF-TF 3.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05565 - K12412 gmx:102665718 166.392