Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05557 ATGAACATTATATATAAATGCTTCATTTACTCGAGCTTTTACATCAGCAAATTGCAGTTGAATGTTCTACTATATTCCATAGTGATGTTATCTCTAAAGATTAGTTTGACTGTAGTAGTCACAGTCCTTTCAATTGTAGCCTTAGTTTCATGTGCTGAAACAAGGTTGGATGTTGAAATTGAAGCTTTGAAAGCTTTCAAGAATTCCATCACCACTGACCCAACTGGAGTACTTGCAAATTGGGTTGACAGCCACCATCACTGCAACTGGTCTGGCATTGCATGTGACAAATCATTAAATCATGTTATTTCAATTTCTCTGGCTGGTCTTCAGCTCCAAGGGGAGATTTCACCATTCCTGGGAAACATTTCAGGCCTTCAGGTTCTTGATTTAAGTTCAAATTCATTTACTGGGTATATTCCTGCTCAGCTCAGTCTTTGCACTCAACTTTCTGAACTATATCTTGTTGAAAATTCTCTCTCAGGCCCAATCCCTCCTGCATTAGGAAACCTGAAGAGCATTCAGTATTTGGATTTAGGTAGTAACTTGTTGAATGGAAGCCTCCCTGAAAGCATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTCAATGTCAACAACCTTACTGGCACAATCCCATCAAACATAGGGAATCTAGTCAACCTTACACAAATTGCAGGATTTGGGAATAACTTTGTTGGGTCTATACCTCTTTCCATAGGTCAGTTGGTAGCTTTGCAATCTCTTGATTTTAGCCAAAACCAGTTATCAGGTGTAATACCTAGAGAGATTGGAAATCTGACAAATTTAGAAAACCTTTTGTTGTTCCAAAATTCCTTGACAGGGAAAATCCCTTCTGAGCTTTCTCAGTGTAAGAAGCTTTTACACCTTGAGTTATATGAAAATCATTTCAATGGGAGTATCCCTCCTGAGCTAGGAAATTTAGTTCAATTGGAGACATTGAGGTTATTTGGCAATAACTTAAATTCCACAATCCCATCTTCCATATTTCAGTTGAAATCATTGACACATTTAGGACTCTCAGAGAATAACTTAGAAGGAACAATATCTGCTGAGATTGGATCTCTGAGTTCCTTACAAGTGCTAACCCTGCATTTAAATAAGTTTACTGGGAAGATCCCTTCATCAATAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATTTCCTTTCAGGTGAACTTCCTTCAAACCTGGGTGTGCTTCATAACTTGAAGATTCTTGTCTTGAACTACAATGCTTTGCATGGATCCATTCCCCCTAGCATTACCAATTGTACTAGTTTGGTAAATGTGAGTTTATCATTTAATGCTTTAACTGGGGAAATTCCTGAGGGTTTTTCAAGGATGCCTAATCTTACTTTCCTGTCTCTTGCATCCAACAAAATGACTGGGAAAATCCCAGATGACCTCTTCAACTGCTCAAATCTTAGTACTCTGAGTTTGGGGAAGAACAACTTCAGTGGATTGATCAATTCTGGTATCAAGAACCTGTTTAAACTCGTGCGTTTGCAGCTGAATGCAAATTCTTTCATAGGGCCAATTCCACCTGAGATTGGAAACTTGAACCAACTCATCACTTTGTCCCTTTCTGAAAATAGATTTTCAGGTCAAATTCCACCAGAACTGTCCAAACTTTCTCTCCTTCAGGGACTCCATCTCCATGACAATGTATTGGAAGGTACAATACCTGATAAACTCTCTGAATTAAAACGACTAACTGAACTTCTGCTGCATCAGAACAAGTTGGTTGGTCAAATACCAGATTCTATCTCAAAGCTTGAGATGCTTTCATACTTGGACATCCATAGCAACAAACTTAATGGGTCCATTCCAAGAAGCATGGGGCAGCTTAATCATCTTTTGATGTTGGATCTCTCTCACAACCACCTGACAGGATCAATTCCCGGAGATGTCATTGCACACTTCAAAGACATGCAGATGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAGTGTTCCAACTGAGCTGGGAATGTTGGAAATGACACAAGCCATTGATATTTCAAACAATAATCTTTCAGGTTTCCTTCCCAAGACACTTGCTGGGTGCAGAAATCTGTTCAGTCTTGATTTTTCAGGAAACAATATTTCAGGTCCTATTCCTGCAGAAGCTTTTAGTCACATGGACTTGCTTCAAAGCTTGAACCTTTCAAGAAATCATCTAGAAGGTGAAATTCCTGAAAACTTGGCAGAGCTTAAGAATCTTAGTTCCCTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTCAGGGCTTTGCCAATCTTTCCAACCTCATGCATCTCAACCTTTCTTTCAATCAACTTGAAGGTCCTGTGCCTATTACTGGAATATTTGCAAATATCAATGCATCTAGTATGATGGGAAACCAGGCTCTTTGTGGAGCAAAATTCCTACATCCTTGCAGAGAGAGTCATCACCATTCACTATCCAAGAAGGGCATAACTATCATTGCTGCATTGGGATCTCTTGCTATACTTCTACTTCTAGTGTTTGTGATTTTAATTCTCAATCGAGGCACCAAATTCAGCAATTCTATAAAAAGTGATAATGGTGAGAAAAATGGACCAAAGTACAGTTCAGCATTGGCTCTTAAAAGATTCAATCCAAAGGAGTTGGAAGATGCCACTGGTTTTTTCAGCACAGAGAACATCCTTGGTGCTAGCAGTTTGAGCACAGTTTACAAGGGTCAATTGGAAGATGGCCAGATTGTAGCCATCAAAAGATTGAATTTGCACCAATTCTCTGCAAATACTGACAAGATCTTCAAGACAGAAGCCAGTACCTTGAGCCAGTTGAGACACAGGAATTTGGTTAAGGTACTTGGATATGCATGGGAGAGTGGGAAAATGAAGGCTTTAGTTCTACAGTACATGGAGAATGGGAATTTGGATAGCATCATACATGACAAAAGGGTAGATCAGTCTAGGTGGACATTATCTGAAAGACTCCAAGTTTTCATTTCTATTGCTAGTGGATTGGATTACTTGCACTCTGGATATGACTTTCCCATTGTACACTGTGATTTAAAGCCTTCTAACATCCTATTAGATAGAGAATGGGAAGCTCATGTCAGTGATTTTGGGACAGCTAGAATACTTGGTCTTCATCTGCAGGATGGTAGTACCCTTTCCTCATCAGCAGCTTTGCAAGGCACAGTTGGCTATTTGGCACCAGAATTTGCCTACATGAGGAAAGTAACGACTAAAGTGGATGTGTTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACAAAAAGAAGGCCAACAGGGCTCTCAGAAGAGGATGGCTTGCCAATCAGTTTGCGTGAAGTAGTGGCAAAAGGCCTTGCAAATGGAATGGAAGAGCTTGTCAATATTGTGGACCCTATGTTAACTAAGAATGTCACAGAAGACCATGTGGAAGTATTGGCAGAGCTCTTTAAGCTATCCTTGTGCTGTACCCTCCCAGATCCTGAAGAACGACTTGACATGAATGGGGTGTTATCTGCCCTTATGAAGCTTAAAACAGAAATATAG 3573 0.3966 MNIIYKCFIYSSFYISKLQLNVLLYSIVMLSLKISLTVVVTVLSIVALVSCAETRLDVEIEALKAFKNSITTDPTGVLANWVDSHHHCNWSGIACDKSLNHVISISLAGLQLQGEISPFLGNISGLQVLDLSSNSFTGYIPAQLSLCTQLSELYLVENSLSGPIPPALGNLKSIQYLDLGSNLLNGSLPESIFNCTSLLGIAFNVNNLTGTIPSNIGNLVNLTQIAGFGNNFVGSIPLSIGQLVALQSLDFSQNQLSGVIPREIGNLTNLENLLLFQNSLTGKIPSELSQCKKLLHLELYENHFNGSIPPELGNLVQLETLRLFGNNLNSTIPSSIFQLKSLTHLGLSENNLEGTISAEIGSLSSLQVLTLHLNKFTGKIPSSITNLTNLTYLSMSQNFLSGELPSNLGVLHNLKILVLNYNALHGSIPPSITNCTSLVNVSLSFNALTGEIPEGFSRMPNLTFLSLASNKMTGKIPDDLFNCSNLSTLSLGKNNFSGLINSGIKNLFKLVRLQLNANSFIGPIPPEIGNLNQLITLSLSENRFSGQIPPELSKLSLLQGLHLHDNVLEGTIPDKLSELKRLTELLLHQNKLVGQIPDSISKLEMLSYLDIHSNKLNGSIPRSMGQLNHLLMLDLSHNHLTGSIPGDVIAHFKDMQMYLNLSYNHLVGSVPTELGMLEMTQAIDISNNNLSGFLPKTLAGCRNLFSLDFSGNNISGPIPAEAFSHMDLLQSLNLSRNHLEGEIPENLAELKNLSSLDLSQNNLKGTIPQGFANLSNLMHLNLSFNQLEGPVPITGIFANINASSMMGNQALCGAKFLHPCRESHHHSLSKKGITIIAALGSLAILLLLVFVILILNRGTKFSNSIKSDNGEKNGPKYSSALALKRFNPKELEDATGFFSTENILGASSLSTVYKGQLEDGQIVAIKRLNLHQFSANTDKIFKTEASTLSQLRHRNLVKVLGYAWESGKMKALVLQYMENGNLDSIIHDKRVDQSRWTLSERLQVFISIASGLDYLHSGYDFPIVHCDLKPSNILLDREWEAHVSDFGTARILGLHLQDGSTLSSSAALQGTVGYLAPEFAYMRKVTTKVDVFSFGIIVMEFLTKRRPTGLSEEDGLPISLREVVAKGLANGMEELVNIVDPMLTKNVTEDHVEVLAELFKLSLCCTLPDPEERLDMNGVLSALMKLKTEI. 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05557 1190 SMART LRR_typ_2 123 147 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 726 749 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 171 195 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 627 651 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 267 291 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 579 603 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 315 339 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 363 387 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 459 483 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 411 435 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 774 799 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 701 725 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 243 266 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 750 773 IPR003591 -
Seca11g05557 1190 SMART LRR_typ_2 531 555 IPR003591 -
Seca11g05557 1190 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1023 1035 IPR008271 GO:0004672|GO:0006468
Seca11g05557 1190 Pfam Leucine rich repeat 581 640 IPR001611 GO:0005515
Seca11g05557 1190 Pfam Leucine rich repeat 682 739 IPR001611 GO:0005515
Seca11g05557 1190 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Seca11g05557 1190 SUPERFAMILY RNI-like 206 498 - -
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 55 201 IPR032675 -
Seca11g05557 1190 Pfam Leucine rich repeat N-terminal domain 59 96 IPR013210 -
Seca11g05557 1190 SUPERFAMILY RNI-like 489 791 - -
Seca11g05557 1190 Gene3D Transferase(Phosphotransferase) domain 1 977 1190 - -
Seca11g05557 1190 PRINTS Leucine-rich repeat signature 630 643 - -
Seca11g05557 1190 PRINTS Leucine-rich repeat signature 750 763 - -
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 307 403 IPR032675 -
Seca11g05557 1190 SUPERFAMILY L domain-like 59 235 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 549 647 - -
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 404 454 IPR032675 -
Seca11g05557 1190 CDD STKc_IRAK 904 1186 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 977 1190 - -
Seca11g05557 1190 FunFam Leucine-rich repeat receptor protein kinase EMS1 429 522 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 859 976 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 56 207 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 648 824 - -
Seca11g05557 1190 ProSiteProfiles Protein kinase domain profile. 898 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05557 1190 Pfam Protein kinase domain 899 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 550 824 IPR032675 -
Seca11g05557 1190 SMART LRR_sd22_2 750 776 - -
Seca11g05557 1190 SMART LRR_sd22_2 411 443 - -
Seca11g05557 1190 SMART LRR_sd22_2 147 179 - -
Seca11g05557 1190 SMART LRR_sd22_2 387 410 - -
Seca11g05557 1190 SMART LRR_sd22_2 243 269 - -
Seca11g05557 1190 SMART LRR_sd22_2 579 602 - -
Seca11g05557 1190 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 208 428 - -
Seca11g05557 1190 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 582 1184 - -
Seca11g05557 1190 Gene3D Phosphorylase Kinase; domain 1 860 976 - -
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 455 549 IPR032675 -
Seca11g05557 1190 Gene3D Ribonuclease Inhibitor 202 306 IPR032675 -
Seca11g05557 1190 SUPERFAMILY Protein kinase-like (PK-like) 876 1183 IPR011009 -
Seca11g05557 1190 SMART serkin_6 898 1187 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05557 Seca-Chr11 154419501 154423882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05557 49 1187 Receptor kinase-like Gene Family AT5G46330 54.983 0.0 1165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g05557 Pkinase 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05557 K13420 - gmx:100817960 1847.4