Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05548 ATGTCTAATGAACCTAAAGAACTTTACTACCACAACCTTGTTCTTGACCATAATCAGCAGAGCATAGAAGGATCTACCATGTATTGTGAAAAGCAATTTTCTTCTTTTCCTTCTGGAGGTTCATCAGCATATGATTCATCATCACAAGGCTTTGATCCATCTTACATGAGCTTCACTGAATGTTTACAAGGAGGCATGGACTACAATTCACTTGCAAGTTCTTTTGGCTTATCTCCTTCCTCATCAGAGGTATTTTCATCTGTTGAAGGAAACCAAAAGCCTTGTGCAGAAACAGGAGATCATAATCATGTTGTAGTTGGTGGCAGTGATCAAACCCTTGCAACCCTTAACTCATCTATCTCTTCCTCATCCTCTGAAGCTGGAGCAGAGGAAGATTCAGGATTAAAGAGAAAGAAAGATAACCAAGTGAAAGAAGAAGAAGGACAAGAAAGCTCTAAGAATGGGGTGCAACGTACAAATTCTGATTTGGATAAATCCAGGAAGAACAAGGATAAGAAGAAAGGAGAGAAGAAACAGAAGGAGCCAAGATTTGCCTTCATGACTAAAAGTGAGGTTGATCATTTGGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTTAAGAATAGTCCATACCCTAGGAGCTACTACAGGTGCACAACACAGAAGTGCACAGTGAAGAAACGCGTGGAGAGGTCATATGAAGACCCAACCACTGTGATAACAACATATGAAGGTCAGCATAACCATCCGGTCCCCACATCGCTAAGAGGCAATGCGGCTCATGGAATGTTCACACCATCTTTGTTAACTACACCGACTCCACTCACACACTTCCCTCAAGATCTCTTTTTGCAGATGCATAATAATAATAATAATCCTTCTTCCCTCAATATCACCCATTCAACAAACATTACTACTACTACTCCTACACCTTCCTCATTTTACTCACACTCACACAACAACATTAACAACTCTCTTCTTCTTCATCACCAGCTTCCTCCTGAATATGGTCTCCTTCAAGACATTGTCCCTTCCATTTTCCTCAACAAGACCCATGACAATTGA 1074 0.4069 MSNEPKELYYHNLVLDHNQQSIEGSTMYCEKQFSSFPSGGSSAYDSSSQGFDPSYMSFTECLQGGMDYNSLASSFGLSPSSSEVFSSVEGNQKPCAETGDHNHVVVGGSDQTLATLNSSISSSSSEAGAEEDSGLKRKKDNQVKEEEGQESSKNGVQRTNSDLDKSRKNKDKKKGEKKQKEPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAAHGMFTPSLLTTPTPLTHFPQDLFLQMHNNNNNPSSLNITHSTNITTTTPTPSSFYSHSHNNINNSLLLHHQLPPEYGLLQDIVPSIFLNKTHDN. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05548 357 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05548 357 MobiDBLite consensus disorder prediction 81 106 - -
Seca11g05548 357 Gene3D WRKY domain 179 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g05548 357 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05548 357 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05548 357 MobiDBLite consensus disorder prediction 130 152 - -
Seca11g05548 357 FunFam WRKY transcription factor 57 181 255 - -
Seca11g05548 357 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 303 IPR044810 GO:0003700
Seca11g05548 357 MobiDBLite consensus disorder prediction 160 189 - -
Seca11g05548 357 MobiDBLite consensus disorder prediction 118 189 - -
Seca11g05548 357 SUPERFAMILY WRKY DNA-binding domain 187 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05548 Seca-Chr11 154241316 154243459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05548 1 353 WRKY Transcription Factor Family AT4G18170 45.531 3.38e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g05548 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05548 - - gmx:100787050 404.831