Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05546 ATGGAAAAGGAGCCTTTGCTCCCATATTTCAGCCCCAGAAAGAGGCCTCCTCCCTCATTGCCACCTCACCTTTGTCCATTACCAGAGAATGATGAGATCGTTCTTCCTATGACCCCTATGGAGTTCAAGGATCGCCTCATCTTTGGTCCTTCTCCTGCTTCCACAGGGGAATACCCTTCACCTTCAGCTTTTGCTGAGGCCTTAACACTTTCCCTTAATTCCCCAAAATCTTCTTCCTCCTCTTCACATGACTTTGCATCAACAGCACTCTTTGATACACCACAACAACAGTCCCAACAACAACAACAACAACAACTCTCATCTTGGCTCCTTGACCCTAATTATTCATGGCGCAAAACCAACCTCCATCGCTCAAAAACTGCACCAGCTATGGCCGTGATCAGTGATTTCAATCACCAACCTGCTGTGAAAAGACCCCAATTTGGTAGCCAGTCTATTGTTCGTCAGGCTGTTATTCTCCTTGTTCTTTATTTGGCATTAGGGGTGTTAATTTATTGGTACAATCGTCATAATTTTACAGCAATTGAGACTCATCCTATAGTTGATGCATTATATTTTTGTATAGTGACAATGTGCACAATAGGCTATGGTGACATTACTCCCAATAGTACAGCAACAAAGGTTTTCTCTATTTTGTTTGTGTTGGTGGGGTTTGGTTTTATAGACATATTGCTCAGTGGGATGGTTAGCTATGTTCTTGATTTACAAGAGAATCATTTGTTAAGGGCAGTGAAGGGCAGGGGGGAAAAGGATGGGAGGTCATATATAGTTGATGTGAAGAAAGGGAGGATGAGGATTAGGATGAAGGTGGCATTGGCATTGGGGGTTGTGGTACTTTGTATTGGAATTGGTGTTGTGTTTATGCATTTTATGGAAAAACTTGGATGGGTAGATTCTTTTTATCTTTCAGTTATGTCTGTTACAACTGTTGGGTATGGAGACCATGCTTTTAAGACCTTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACACTTGCAGTGGCCCGAGCATTCCTCTATTTGGCTGAGGCAAGAGTGGATAAGCGGCATAGGAGGATGGCAAAGTGGATTCTTGGTCAGGATATGACTGTGTCTGAGTTTCTTGCTGCAGACATAGACAATAATGGATTTGTGAGTAAATCAGAATATGTTATATACAAGCTCAAGGAGATGGGAAAAGTATCCGAGAAGGACATCATGCAGGTTAGTGAGAAGTTTGATAGACTAGATGCCGGTAACTGCGGAAAAATAACACTTGCTGATCTCATGGAGAGTCATCATTGA 1314 0.4247 MEKEPLLPYFSPRKRPPPSLPPHLCPLPENDEIVLPMTPMEFKDRLIFGPSPASTGEYPSPSAFAEALTLSLNSPKSSSSSSHDFASTALFDTPQQQSQQQQQQQLSSWLLDPNYSWRKTNLHRSKTAPAMAVISDFNHQPAVKRPQFGSQSIVRQAVILLVLYLALGVLIYWYNRHNFTAIETHPIVDALYFCIVTMCTIGYGDITPNSTATKVFSILFVLVGFGFIDILLSGMVSYVLDLQENHLLRAVKGRGEKDGRSYIVDVKKGRMRIRMKVALALGVVVLCIGIGVVFMHFMEKLGWVDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYLAEARVDKRHRRMAKWILGQDMTVSEFLAADIDNNGFVSKSEYVIYKLKEMGKVSEKDIMQVSEKFDRLDAGNCGKITLADLMESHH. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05546 437 FunFam Two-pore potassium channel 5 142 252 - -
Seca11g05546 437 ProSitePatterns EF-hand calcium-binding domain. 381 393 IPR018247 -
Seca11g05546 437 SUPERFAMILY Voltage-gated potassium channels 150 239 - -
Seca11g05546 437 Gene3D - 345 437 - -
Seca11g05546 437 Gene3D - 282 344 - -
Seca11g05546 437 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 158 411 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05546 437 PRINTS Two pore domain K+ channel signature 315 324 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05546 437 PRINTS Two pore domain K+ channel signature 196 224 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05546 437 SUPERFAMILY EF-hand 373 434 IPR011992 -
Seca11g05546 437 Pfam Ion channel 159 239 IPR013099 -
Seca11g05546 437 Pfam Ion channel 283 352 IPR013099 -
Seca11g05546 437 FunFam Two-pore potassium channel 3 260 374 - -
Seca11g05546 437 SUPERFAMILY Voltage-gated potassium channels 268 373 - -
Seca11g05546 437 MobiDBLite consensus disorder prediction 1 25 - -
Seca11g05546 437 Gene3D - 142 258 - -
Seca11g05546 437 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05546 Seca-Chr11 154176793 154184209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05546 4 434 Ion Channels AT4G18160 61.261 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05546 K05389 - gmx:100787238 676.781