Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05545 ATGGATGAGCCTCTGCTCCCATATGGCAGCCCCAGAACGAAGCCTCCGCCAACATCCCAACTTTGTCCTGTCCCCCCCATGAATGACGATATCATTCTTCCTATTTCCCCTTTGGAGTTCAAGGATCGCCTGATCTTTGGCCCTTCTTCTGCTTCCTCAGGGGACCCTTCACCTTTGGTTGAGGCCTTAACACAATCTTCTTCTTACTACTCTGCATTATCATCACTCTTCAACGCACCACAACAACACTCCTCTTGGCTTATTGATCCCAATTATCCATGGCACAAAACCAACGTCTGTCACTCCAAAACTGCACCACCTTCAGCCATGGCAGTGATTAATGATTTCAATCATCAACCCGCTGAGCCAAGACCCCAAGTTGGTAGACACTTTATTGTTCGCCAGGCTATTGTTCTTCTTGTTCTTTATTTGGCATTGGGGATGATCATTTATTGGTTGAATCGTCCTAATTTTTTAGCAACTGAGACTCATCCTATAGTGGACGCAATATATTTTTGTATAGTGACAATGTGCACAATAGGCTATGGTGACATCACTCCCAATACTACAACAACAAAGCTTTTCTCTATGTTGTTTGTATTGGTGGGTTTTGGTTTTATTGGCGTATTGCTAAGTGGGATGGTTAATTATGTTCTTGATTTGCAGGAGAATCATTTGTTGAGGGCTGTGAAAGGTAGGGGTACAGAAAATAATGGGATGTCATATATAATTGATGTGAAGAAAGGGAGGATGAGGATTAGGATAAAGGTGGCATTGGCATTGGGGGTTGTGGTGCTTTGTATTGGAGTTGGTGTTGGAGTTATGCACTTTGTGGAAAGGCTTGGATGGTTAGATTCTTTTTATCTTTCTGTTATGTCTGTGACAACGGTTGGGTATGGCGACCATGCATTCAAGACCTTGCATGGTCGTATCTTTGCTGCAATTTGGTTGCTTGTGTCAACACTTGCAGTGGCCCGGGCATTCCTCTATTTTGCTGAGGCAAGAGTGGATAAGAGGCATAGGAGGTTCGCAAAGTGGATTCTTGGCCGGGATATGACTATTTCTGAGTTTGTTGCTGCAGACATAGATAATAATGGGTTTGTGAGTAAATCAGAATATGTAATATACAAGCTCAAGGAGATGGGAAAAATCTCTGAGAATGACATTATGCAGATTAGTGAGAAGTTTGATAGACTAGATGCTGGAAAGTATGGAAAAATAACACTTGCTGATCTCGTGGAGGGTCATAATTGA 1254 0.4266 MDEPLLPYGSPRTKPPPTSQLCPVPPMNDDIILPISPLEFKDRLIFGPSSASSGDPSPLVEALTQSSSYYSALSSLFNAPQQHSSWLIDPNYPWHKTNVCHSKTAPPSAMAVINDFNHQPAEPRPQVGRHFIVRQAIVLLVLYLALGMIIYWLNRPNFLATETHPIVDAIYFCIVTMCTIGYGDITPNTTTTKLFSMLFVLVGFGFIGVLLSGMVNYVLDLQENHLLRAVKGRGTENNGMSYIIDVKKGRMRIRIKVALALGVVVLCIGVGVGVMHFVERLGWLDSFYLSVMSVTTVGYGDHAFKTLHGRIFAAIWLLVSTLAVARAFLYFAEARVDKRHRRFAKWILGRDMTISEFVAADIDNNGFVSKSEYVIYKLKEMGKISENDIMQISEKFDRLDAGKYGKITLADLVEGHN. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05545 417 ProSitePatterns EF-hand calcium-binding domain. 361 373 IPR018247 -
Seca11g05545 417 MobiDBLite consensus disorder prediction 9 23 - -
Seca11g05545 417 PRINTS Two pore domain K+ channel signature 295 304 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05545 417 PRINTS Two pore domain K+ channel signature 175 203 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05545 417 Pfam Ion channel 139 218 IPR013099 -
Seca11g05545 417 Pfam Ion channel 263 333 IPR013099 -
Seca11g05545 417 SUPERFAMILY EF-hand 355 413 IPR011992 -
Seca11g05545 417 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 165 391 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca11g05545 417 Gene3D - 262 323 - -
Seca11g05545 417 Gene3D - 126 238 - -
Seca11g05545 417 FunFam Two-pore potassium channel 3 240 354 - -
Seca11g05545 417 MobiDBLite consensus disorder prediction 1 23 - -
Seca11g05545 417 SUPERFAMILY Voltage-gated potassium channels 132 226 - -
Seca11g05545 417 Gene3D - 324 417 - -
Seca11g05545 417 SUPERFAMILY Voltage-gated potassium channels 246 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05545 Seca-Chr11 154153130 154157105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05545 3 415 Ion Channels AT4G18160 60.557 4.66e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05545 K05389 - gmx:100804249 598.971