Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05539 ATGGACCATGGAATGGAAGACTATGTTTTTGCTCAACACAGGAAGCTTAATGGTTATGACTTAGGATTGTATGCAATATTTGATGGTCACTCAGGTCGTGATGTAGCAAAATACTTACAAAGCCATCTATTTGAAAACATACTGAGTGAGCCTGATTTCTGGAGAAATCCAGTGCATGCTGTTAAGAAAGCATGTAAAGCTACAGATGATGAGATTTTAGAAAGCATAGCTGATTCACGTGGAGGATCAACAGCTGTTGCAGCAATACTAATTAATGGAGTAAAGCTAGTGGTAGTCAATGTTGGTGATTCTAGAGCAATATCATGCAAAAATGGTCTTGCAAAACAAATTACTGTGGATCATGATCCAGAGAAGGAGAAAGATCTTGTTGAGAGTAGAGGAGGTTTTGTGTCCAAGAAACCTGGGAGTGTTCCAAGAGTAGATGGCCAATTAGCTATGACAAGAGCATTTGGAGATGGAAAACTTAAGGAGCACATTACTGCAGAACCAGATGTGATGATTCAGAAGATTGGTGAGGACACTGAATTCATCATTTTGGCAAGTGATGGTCTGTGGAAGGTGATGACAAATCAGGAGGCTTGTGATTGTATCAGGGATGTTGATGATGCTCGACAAGCATCTAAAATGTTAGTTAAAGAAGCCAAATCAATGGGAAGCTATGATGATATTTCATGCATAGTTGTTATGTTTTAG 714 0.3908 MDHGMEDYVFAQHRKLNGYDLGLYAIFDGHSGRDVAKYLQSHLFENILSEPDFWRNPVHAVKKACKATDDEILESIADSRGGSTAVAAILINGVKLVVVNVGDSRAISCKNGLAKQITVDHDPEKEKDLVESRGGFVSKKPGSVPRVDGQLAMTRAFGDGKLKEHITAEPDVMIQKIGEDTEFIILASDGLWKVMTNQEACDCIRDVDDARQASKMLVKEAKSMGSYDDISCIVVMF. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05539 237 SUPERFAMILY PP2C-like 3 237 IPR036457 -
Seca11g05539 237 PANTHER PROTEIN PHOSPHATASE 5 235 IPR015655 GO:0004722|GO:0006470
Seca11g05539 237 Gene3D - 2 237 IPR036457 -
Seca11g05539 237 SMART PP2C_4 1 235 IPR001932 -
Seca11g05539 237 ProSiteProfiles PPM-type phosphatase domain profile. 1 237 IPR001932 -
Seca11g05539 237 Pfam Protein phosphatase 2C 20 230 IPR001932 -
Seca11g05539 237 FunFam Probable protein phosphatase 2C 39 1 237 - -
Seca11g05539 237 CDD PP2Cc 5 235 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05539 Seca-Chr11 154083426 154085605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05539 3 237 PP2C-type Phosphatase Gene Family AT4G28400 59.746 4.26e-100 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05539 - - gmx:100814772 430.254