Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05535 ATGTTCAGCAGAGGAAGAATACCAGGAGATATTGGAAACTTAACTAAGCTTGCCTCCTTATATCTTGATGAGGACAACTTGGAAGGTCTAGTACTCTGCTGGTTTTGGTTTTGGGGTCTTTTTCTCTGGTTTGGTTTGGAACAGAGAGAAATTCCATTCTCTCTTTTTAACATATCTTCAATGAGAGTAATCAGCCTTGAAAAAAACAAGTTAAATGGTAGCCTAACAGAAGAGATGTTTCATCAGCTTCCATTTCTAGAATTCTTGGCTTTGGATAATAATCAATTTGTGGGAAGCATTCCAAAATCTATTAGCAATTGCTCGATGCTCCAAGAATTATATCTAGGTGATAACTCCTTCTCAGGTTCTATACCCGAGGAGATTGGTGTTCTTCCTATACTTTCAAATTTAACATTAGGAAGTAACCATTTAACCGGATCTATTCCCTTAAAAATCTTTAATATGTCATCATTGAGTTATTTGTTTGTAGCTAGTAATTCTCTCTCAGGATTTCTTCCATCACAAATCAGCTTAGAAAACTTGGAAGAACTATACTTGTATGACAACCAACTCCATGGAAACATTCCAAGTAGCTTATCCAATGCTTCTAAGCTTAACTATCTGGATTTGAAGTTGAATAAGTTCAATGGAGCTATACCTAATGCTCTTGGAGAGTTGAGATACCTTGAGCAACTTGATGTAGGATACAATAATTTGACTACTGATGCTTCCACTATAGAATTAAGCTTCCTTACTTCTTTGAATTTCCTTCAAATATCAGGGAATCCAATGCATGGACACCTTTCTAAATCAATTGGGAATATGTCTAACTTGGAGCAGTTCATAGCTGATTCTTGCAGCATAATTGGTAAAATTCCATTGCAGATTGGAAATTTAAGCAACCTGTTTGTATTGAGTTTATATCATAATGGTTTAAGTGGATCAATTCCAGCAACAATTCAGGGTTTGCAGTCTCTTCAATATTTGAGTCTTGGAAACAACCAACTAAAGGGAACCATCATTGATGAACTTTGTGCAATGAATCAGCTGAGTGAGTTGTATATAACTGAAAATAAGCTAATTTCTGGAGAGATCCCAACTTGCTTTGGTAATCTTACATCTCTAAGAAAGGTTTACTTGAACTCTAACAAACTGAATCAGGTGCCCTCTTCTCTTTGGAGTCTCAAAGACATTTTGGAGGTAAACTTATCAGACAATGCTTTAACTGGATTGCTTCCACTTGATATTGGAAATTTAAACGCTGCTATATTTTTGGATCTATCATGGAATCAGATTTCAGGAAGTATTCCTAGGGACATTACTAGATTGCAAAACTTGCAAATTCTCAACTTAGCACATAATAAATTGCTAGGGAATATTCCTGACTCATTTGGTAGTTTGATAAGTTTGACATCCTTGGACTTATCCCAAAACAATTTGTTTGGCATGATTCCAAAATCCTTGGAGTCACTTCATTATCTCAAATTTATCAATCTTTCTTATAATAAGTTAGAAGGTGAGATTCCCAATGGTGGACCTTTCAAAAAATTCACAGCACAATCTTTCATATTTAACAAAGCACTCTGTGGAAATGCTAGACTACAAGTCCTACCATGTAGTCAAATGAAGAGGAAAAAGTCAAATGCAAATATGTTTTTCATCAAATGCATTTTGCCAGTAATTTTGTCAACCATTTTGGTTGTTTTATGTGTGTTCCTTCTAATAAGGCGTCAAAGAAAGAATAATGGTGATTCTACAGAAGAAAGTTTGTCAACATTACCAGCTACAAAAACAATTTCCTACAATGAACTTTCACTAGCAACCAATGGATTTGATGAGAGTAATTTACTTGGTAAGGGTAGTTTTGGCTCTGTATTCAAAGGTACACTTCCAAATGGGATGGTTGTTGCAATCAAATTATTTAGTTTGGACTTAGAATTTGGATCAAAGAGCTTTCATACAGAATGTGAAGCTATGCGCAATCTTCGACATCGAAATCTTATCAAGATCATAGGTAGTTGCTCAAATGTTGATTACAAGCTTTTAGTAATGGAATTCATGCCCAATGGGAGCCTTGAAAGCTGGTTATATTCTCATAACAACTATTTGGACTTCTTACAAAGGCTAAATATAATGATAGATGTAGCATCTGCATTGGACTATATGCATCATGGTTCTATGCCAACTGTGGTTCACTGTGATGTAAAGCCTAATAATGTATTATTGGATGAAGACATGGTTGCTCATGTTAGTGACTTTGGCCTTGCTAAATTGCTAGATGAAGAACAATCAAAGGAATATACCAAAACCATTGCTACACTTGGCTACATTGCACCAGAGTATGGATCTAAAGGGACTATCTCTACAAAAGGAGATGTATATAGTTTTGGGATTATGTTAATGAAAAAATTTACAAGAAAGAAGCCAACAGATGAGTTGTTTGTTGTTGGATTGAGCATGAAAGGTTGGGTTAGTGAATCATTACCCCATGCAGTCACTCAAATTGTGGATTCTAATTTGTTACAAAATGAAGGACACCATATTGATGACATCACAACATCTATATCTTCTATTTTTGGATTGGCCTTGAATTGTTGTGCAGATTTACCTGAAGAACGGATGAATATGACAGATGTTGCTGCAACATTAAACAAAATAAAGTCCACTTTTCCAAAAAATAATGACAAGTAG 2691 0.3515 MFSRGRIPGDIGNLTKLASLYLDEDNLEGLVLCWFWFWGLFLWFGLEQREIPFSLFNISSMRVISLEKNKLNGSLTEEMFHQLPFLEFLALDNNQFVGSIPKSISNCSMLQELYLGDNSFSGSIPEEIGVLPILSNLTLGSNHLTGSIPLKIFNMSSLSYLFVASNSLSGFLPSQISLENLEELYLYDNQLHGNIPSSLSNASKLNYLDLKLNKFNGAIPNALGELRYLEQLDVGYNNLTTDASTIELSFLTSLNFLQISGNPMHGHLSKSIGNMSNLEQFIADSCSIIGKIPLQIGNLSNLFVLSLYHNGLSGSIPATIQGLQSLQYLSLGNNQLKGTIIDELCAMNQLSELYITENKLISGEIPTCFGNLTSLRKVYLNSNKLNQVPSSLWSLKDILEVNLSDNALTGLLPLDIGNLNAAIFLDLSWNQISGSIPRDITRLQNLQILNLAHNKLLGNIPDSFGSLISLTSLDLSQNNLFGMIPKSLESLHYLKFINLSYNKLEGEIPNGGPFKKFTAQSFIFNKALCGNARLQVLPCSQMKRKKSNANMFFIKCILPVILSTILVVLCVFLLIRRQRKNNGDSTEESLSTLPATKTISYNELSLATNGFDESNLLGKGSFGSVFKGTLPNGMVVAIKLFSLDLEFGSKSFHTECEAMRNLRHRNLIKIIGSCSNVDYKLLVMEFMPNGSLESWLYSHNNYLDFLQRLNIMIDVASALDYMHHGSMPTVVHCDVKPNNVLLDEDMVAHVSDFGLAKLLDEEQSKEYTKTIATLGYIAPEYGSKGTISTKGDVYSFGIMLMKKFTRKKPTDELFVVGLSMKGWVSESLPHAVTQIVDSNLLQNEGHHIDDITTSISSIFGLALNCCADLPEERMNMTDVAATLNKIKSTFPKNNDK. 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05535 896 SUPERFAMILY L domain-like 6 265 - -
Seca11g05535 896 SMART LRR_typ_2 299 322 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 323 347 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 131 155 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 178 202 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 372 395 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 443 466 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 83 107 IPR003591 -
Seca11g05535 896 SMART LRR_typ_2 467 491 IPR003591 -
Seca11g05535 896 FunFam Leucine-rich repeat receptor protein kinase EMS1 51 149 - -
Seca11g05535 896 Pfam Leucine rich repeat 180 239 IPR001611 GO:0005515
Seca11g05535 896 Pfam Leucine rich repeat 445 504 IPR001611 GO:0005515
Seca11g05535 896 Gene3D Transferase(Phosphotransferase) domain 1 687 896 - -
Seca11g05535 896 SUPERFAMILY RNI-like 178 510 - -
Seca11g05535 896 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Seca11g05535 896 ProSiteProfiles Protein kinase domain profile. 611 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05535 896 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 247 543 - -
Seca11g05535 896 Pfam Protein kinase domain 612 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05535 896 SMART serkin_6 611 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05535 896 Gene3D Phosphorylase Kinase; domain 1 573 686 - -
Seca11g05535 896 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 687 896 - -
Seca11g05535 896 FunFam Serine-threonine protein kinase plant-type 591 686 - -
Seca11g05535 896 PANTHER OS04G0122200 PROTEIN 5 145 - -
Seca11g05535 896 SUPERFAMILY Protein kinase-like (PK-like) 585 889 IPR011009 -
Seca11g05535 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Seca11g05535 896 FunFam Leucine-rich repeat receptor protein kinase EMS1 150 245 - -
Seca11g05535 896 Gene3D Ribonuclease Inhibitor 2 245 IPR032675 -
Seca11g05535 896 Gene3D Ribonuclease Inhibitor 246 548 IPR032675 -
Seca11g05535 896 SMART LRR_sd22_2 323 346 - -
Seca11g05535 896 SMART LRR_sd22_2 443 462 - -
Seca11g05535 896 SMART LRR_sd22_2 467 493 - -
Seca11g05535 896 SMART LRR_sd22_2 347 374 - -
Seca11g05535 896 SMART LRR_sd22_2 178 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05535 Seca-Chr11 154033421 154038604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05535 2 892 Receptor kinase-like Gene Family AT3G47570 34.454 1.09e-155 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca11g05535 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05535 - K13420 gmx:100784397 1343.18