Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05511 ATGGTGAAAATCTCGGTCGGTGGATACGATGATGGGGAAGGACCTAGCAACCCAACCCAGAAGCGACCCAGGGTAGAATTTGAAGACGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGATGAAGAAGAAGAAGAAGAAGAAGAGGACTATGAAATGGAAGACCCTCCAATTGGGACCCAAGAAGCAGAACAAGAACACAACAACAATGAAACTGAAGGAAGCGGAAACAGTAATGACAGGGGCAGGTCCATTTCTGCAATCATAACCGACCCTGATGCCCTTGATTGCTGCATTTGCTTTGAACCCTTGAGTGTTCCTGTCTTCCAGTGTGAGAATGGGCATGTTGCTTGCTCTAATTGCTGTGCCAGACTTAGGAACAAGTGTCCCATGTGCTCAATGCCCATCGGCTATAATCGATGCCGAGCTGTGGAGAAGCTGCTAGAATGTATTAAAATATCATGCCTGAATGCAAAATATGGCTGTAAAGAGATGTTTAGTTACAGTGTGAAAAATGACCATGAGGAGGATTGCATCTACATACCATGTTTATGCCCACATACAGGTTGCAGCTTTGTTGCCTCATCCAAGGAGTTATCCCTCCACTTCAGCCATAGGCATGTAGGTTCTGGAATACAGTTTACATATGATAAATTCTTCACTGTCTTCTTAAACACTGACCAAAAAGCAATTGTTCTTCAAGAGAAAAATGATGCTAATCTGTTTATTGTTCAAAATAACCGTGAGAGTCTGGGGAATTTAGTCCATGTCAGTTGCATTGGCCCCAAATCGATGGCAGTGTTTCATTATGATGTCTTGGGAAGGTCTCGGGGAAGCACTCTAATATTGCAATCTGTTACCAACATCAGTCAAAGCATTGCTCGGACTACTCCTTCAACAGGGTTCCTTTTGATTCCATCTGACTTTTTTGGTTCTGGGCAACTCCAACTGGATATTCGCATAAAGTTACAACATTAA 981 0.4332 MVKISVGGYDDGEGPSNPTQKRPRVEFEDEEEEEEGGGGGGDEEEEEEEEDYEMEDPPIGTQEAEQEHNNNETEGSGNSNDRGRSISAIITDPDALDCCICFEPLSVPVFQCENGHVACSNCCARLRNKCPMCSMPIGYNRCRAVEKLLECIKISCLNAKYGCKEMFSYSVKNDHEEDCIYIPCLCPHTGCSFVASSKELSLHFSHRHVGSGIQFTYDKFFTVFLNTDQKAIVLQEKNDANLFIVQNNRESLGNLVHVSCIGPKSMAVFHYDVLGRSRGSTLILQSVTNISQSIARTTPSTGFLLIPSDFFGSGQLQLDIRIKLQH. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05511 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 46 323 IPR044286 -
Seca11g05511 326 MobiDBLite consensus disorder prediction 1 85 - -
Seca11g05511 326 ProSiteProfiles Zinc finger SIAH-type profile. 151 209 IPR013010 GO:0008270
Seca11g05511 326 ProSiteProfiles Zinc finger RING-type profile. 98 134 IPR001841 -
Seca11g05511 326 Pfam Seven in absentia protein family 141 306 IPR018121 GO:0005737|GO:0006511|GO:0007275
Seca11g05511 326 SUPERFAMILY TRAF domain-like 152 322 - -
Seca11g05511 326 CDD RING-HC_SIAHs 96 134 - -
Seca11g05511 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 204 IPR013083 -
Seca11g05511 326 SUPERFAMILY RING/U-box 97 140 - -
Seca11g05511 326 MobiDBLite consensus disorder prediction 28 60 - -
Seca11g05511 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 141 IPR013083 -
Seca11g05511 326 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05511 Seca-Chr11 153680102 153682947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05511 38 208 C3H Transcription Factor Family AT2G41980 30.682 2.78e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05511 K04506 - gmx:100778869 421.779