Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05506 ATGTGCAACATCTTTGGCACAATTATGAACAACTATCAAGGTGATTTAACTGACATAATCCGTGCATCTTATGGCAGCTTCAGCACAGGCACTGAAGCTGCTCCCTTCTTTTGCGATCATCACTGGCAATTCTCTTCTGTTTTGGAGGAAGACCCTAGTTGCAGCTTTGGTGATCCATTCTCAAACATGAGAGACCCCTTTCTACATGAGCTTGATATGCTGCCTAATGGTTCTGCCTACTTTAACAGTACTTCTGGGGAATTGATGAAAGAAGCAGCTTGTTTTGGTGGTGGTGGTGTTATTACTTCTGTTTTGGCACAAAAGAACATTCTAGAGGATGATATGAGAAGGCCTTGTAACAGCATAATGTCACACATGACTCAGATCTCTCCCAATTCTAAGTTACCAATCTCACCAGCTGATTCAACTGGTAAGATGAATATTATTGCAAAGGCCTCTAAAGATCATTGCTTGGTGGACAACACAGGAGTAGAACAGCAGATCTCAACTCCACGGAATCCGGGTCTTAAGCGAAGGAAGATCCTGGCAAAGAAGTCAATTTATATTCCTGCACCAGCAGCTCCAAACAGCAGACAAAGTGGAGAGGTAGTTCCTTCTGATCTGTGGGCTTGGAGAAAATATGGTCAGAAACCTATTAAAGGTTCCCTATATCCAAGGAGTTATTATAGATGCAGCAGCTCAAAGGGTTGTCCAGCCAGGAAACAAGTTGAAAGGAGCAGAACAGATCCAAACATGTTGGTCATAACTTACTCTTCAGAGCATAACCATCCATGGCCAACTCAGAGAAATGCTCTCGCTGGTACAGCGCGATCCCAATCATCCAAGAATAATATTGTTGCTGCTGCTTCAAAGAATTCAGAAACCACTCAACCCCAAAATGGCACAACAAAGCCAGATGAAGAGAAGCAAGAGACCAACAGTGATGACAGCAATGTGTCCCCAGTGAATGCAGGGAACTCAGCAAACAGTACTGTAAAGGGAGAGATTGAAACGGATGATGGGGAATTCAGTAATGGACTTATCCCTTACAAGCCATCTATTCTGAAGTGCAACCAACTTGAGGACTTGTTTGCAGAATTGGGAGAAATCAAAGCTCACTCACTAAATTACCATCCCTTCTCTTTCACTGATCCAAATATAACTCCACAAGTAACATAA 1179 0.4283 MCNIFGTIMNNYQGDLTDIIRASYGSFSTGTEAAPFFCDHHWQFSSVLEEDPSCSFGDPFSNMRDPFLHELDMLPNGSAYFNSTSGELMKEAACFGGGGVITSVLAQKNILEDDMRRPCNSIMSHMTQISPNSKLPISPADSTGKMNIIAKASKDHCLVDNTGVEQQISTPRNPGLKRRKILAKKSIYIPAPAAPNSRQSGEVVPSDLWAWRKYGQKPIKGSLYPRSYYRCSSSKGCPARKQVERSRTDPNMLVITYSSEHNHPWPTQRNALAGTARSQSSKNNIVAAASKNSETTQPQNGTTKPDEEKQETNSDDSNVSPVNAGNSANSTVKGEIETDDGEFSNGLIPYKPSILKCNQLEDLFAELGEIKAHSLNYHPFSFTDPNITPQVT. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05506 392 MobiDBLite consensus disorder prediction 315 334 - -
Seca11g05506 392 FunFam probable WRKY transcription factor 14 179 259 - -
Seca11g05506 392 SMART WRKY_cls 205 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05506 392 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05506 392 Gene3D WRKY domain 194 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g05506 392 Pfam WRKY DNA -binding domain 207 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca11g05506 392 SUPERFAMILY WRKY DNA-binding domain 203 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca11g05506 392 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 14 375 IPR044810 GO:0003700
Seca11g05506 392 MobiDBLite consensus disorder prediction 289 303 - -
Seca11g05506 392 MobiDBLite consensus disorder prediction 289 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05506 Seca-Chr11 153602698 153607891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05506 1 375 WRKY Transcription Factor Family AT1G30650 42.752 1.51e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca11g05506 WRKY 6.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05506 - - gmx:102669548 424.861