Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05505 ATGTGCTTTTTGATGGATCCTCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCATAGAGTTGATGGTATTGATACTCATGATCATTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATAAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGGACAGGATGTGTTTTTAGGAGGCAAGATTTGTATGGTTATAATCCTCCTAGGAGGCAAGATATGTTTCACACACACACACACATGACAAAAATTACATATGGCAAATGTGTTGTATAA 285 0.3825 MCFLMDPQTGKKVCYVQFPHRVDGIDTHDHYANRNTVFFDINIKGLDGIQGPVYVGTGCVFRRQDLYGYNPPRRQDMFHTHTHMTKITYGKCVV. 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05505 94 Pfam Cellulose synthase 1 82 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca11g05505 94 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 86 IPR029044 -
Seca11g05505 94 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05505 Seca-Chr11 153589761 153590153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05505 1 73 Cell Wall Biosynthesis AT5G17420 86.301 1.91e-44 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05505 K10999 - gmx:100815436 150.984