Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05504 ATGGAACAGTACGAGAAGGTTGAGAAGATAGGTGAAGGAACCTACGGCGTCGTTTACAAGGCTCGTGACCGTGTAACTAACGAGACCATCGCGTTGAAGAAGATTCGCCTCGAGCAGGAAGATGAGGGGGTTCCCAGCACCGCCATTCGAGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCATATGGATTCATCTCCAGAATTTTCAAAAGATCCTCGACAAGTAAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCTTACTGTCATTCACATAGAGTTCTTCATCGAGACTTGAAACCACAGAATTTGTTGATAGATCGCAGCACTAATGCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGAATTCCTGTTAGGACATTTACACACGAGGTGGTGACACTATGGTACAGAGCTCCAGAAATATTGCTCGGATCCCGTCATTATTCTACCCCAGTTGATGTATGGTCAGTCGGATGCATATTTGCAGAAATGGTAAACCAACGACCTCTTTTCCCTGGGGATTCTGAGATTGATGAATTGTTTAAAATATTCAGAATCATGGGTACACCAAATGAAGACACATGGCCTGGAGTGACGTCGTTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGCCACCTAAGGACCTAGCAACTGTGGTCCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTTTCTAGTATGCTGCGATTGGATCCCACCAGAAGAATTAACGCCAGGAGTGCTCTTGAGCATGAATACTTCAAAGACATTAAATTTGTACCCTGA 885 0.4362 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFSKDPRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQRPLFPGDSEIDELFKIFRIMGTPNEDTWPGVTSLPDFKSAFPKWPPKDLATVVPNLEPAGLDLLSSMLRLDPTRRINARSALEHEYFKDIKFVP. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05504 294 FunFam Cell division control protein 2 homolog 86 292 - -
Seca11g05504 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca11g05504 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05504 294 PANTHER CELL DIVISION PROTEIN KINASE 2 287 - -
Seca11g05504 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Seca11g05504 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Seca11g05504 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Seca11g05504 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Seca11g05504 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05504 294 FunFam Cell division control protein 2 1 84 - -
Seca11g05504 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05504 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05504 Seca-Chr11 153510652 153517556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05504 1 294 Core Cell Cycle Gene Families AT3G48750 86.395 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca11g05504 Pkinase 1.6e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05504 K02206 - gmx:100127418 573.548