Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05501 ATGGAGTGGAAGTGGAAGACGAAGAAGCAGCCACGCTTGCAGCGAGTGAATGCTAAGAAGAACATCGATTACCAACCCCCTTCTCCCTGTATCCCTTCACCTACTCCTTCCTTCCGTTCCGAGCAGCAAACCAGTCTTCGCGTGATGGGTATCGACGGCGAATTCGACCGCATCTTTCAGAGCTTGGGCCTTTCTGGACCCGAAGACTTTGCTATCCCAACTGCAGATTGGGAAGCCCGAAAGGCTCGCTTTGCTTCCTCTGATGTTCCACCCAAATTGGAAACCACTACTTCTCACGCTGACTTCAAAAATGGTACCTTTGAAGGGGAACACTCGAACATGAAGCTTAAGGTGAAGCTTAAGCCTGAGAATGGAGATGGGGTTGGTGGAGGAGGAGGGATCAAGGGTGTTAGGCCTCCCCTTTTAGTTCCAGTTCCACCCTCGGCGATTTTGAGTCCAATTGTTGATGGGGTTAGTTCTACTTGGAATTCCACGATGTCTTTTGCTGCACCCCAACATGATACTGATGCTATTGGTGTTGGTGTTCGTGTTGTTGATTCTCCTTCATCTTCGGGTGAGCATGATGTTAGGGGTGTTGTGGGTCGGCTGAGAAATGGGGAAAGGAGTGTGCTTTTTACTGATTCTGGTTCGTTCACTACATCCCATGATGATGATAGTGATGTTGGTGGTGAGAGGGCTTGTTCTTGTTCTGGTTCTGGCTTGGCTGATGAGCTTGTTTGTTATGTTTCTTCAAATGATTGGTTTAGACGAACTTTCTCCTCGTGGCAAAAGGGTGACATTTTGGGAAAGGGGTCCTTTGGAACGGTGTATGAAGGCTTCACGGATGATGGATTCTTTTTTGCGGTAAAGGAGGTGTCTTTGCTGGATGAAGGTATCCAGGCAAAACAGAGCATTCTCCAACTTCAGCAGGAAATATCTCTGTTGAGCCGGTTTCAACATGAGAACATAGTTCGATATTTTGGCTCAGACAAGGACGAAAGTACACTATATATCTTCCTTGAGCTTGTGTCAAAAGGGTCATTGGCCAGTCTCTATCAAAAGTACCGCTTAAATGATTCTCAAGTTTCTGCATACACAAGGCAGATTTTAAATGGCTTGAAGTATCTTCATGATCGTAATGTGGTCCACAGGGATATCAAGTGTGCTAATATACTGGTTGATGTAAGTGGGGCAGTCAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCTCCTGAGGTTGTTAACTTAAAGAACCAAGGTTATGGGCTAGCAGCTGATATATGGAGCTTAGGGTGTACAGTTTTAGAGATGTTGACAAGGCAGCCTCCTTACTCTGAATTGGAAGGAATGCAAGCATTATTTCGGATTGGCAGGGGTGAACCTCCACCTATTCCGGAATCTTTATCTAGAGATGCCCAAGATTTCATTCTTAAATGCTTACAAGTAAACCCAAATAAACGCCCAACTGCAGCCCAGCTATTGGATCATCTATTTCTAAGGAGACCATTTGTACCTCCCTTAAGTCCTGCTTCTACACATAGTATCTTACGGTTTTAA 1605 0.453 MEWKWKTKKQPRLQRVNAKKNIDYQPPSPCIPSPTPSFRSEQQTSLRVMGIDGEFDRIFQSLGLSGPEDFAIPTADWEARKARFASSDVPPKLETTTSHADFKNGTFEGEHSNMKLKVKLKPENGDGVGGGGGIKGVRPPLLVPVPPSAILSPIVDGVSSTWNSTMSFAAPQHDTDAIGVGVRVVDSPSSSGEHDVRGVVGRLRNGERSVLFTDSGSFTTSHDDDSDVGGERACSCSGSGLADELVCYVSSNDWFRRTFSSWQKGDILGKGSFGTVYEGFTDDGFFFAVKEVSLLDEGIQAKQSILQLQQEISLLSRFQHENIVRYFGSDKDESTLYIFLELVSKGSLASLYQKYRLNDSQVSAYTRQILNGLKYLHDRNVVHRDIKCANILVDVSGAVKLADFGLAKATKMNDVKSSKGSPYWMAPEVVNLKNQGYGLAADIWSLGCTVLEMLTRQPPYSELEGMQALFRIGRGEPPPIPESLSRDAQDFILKCLQVNPNKRPTAAQLLDHLFLRRPFVPPLSPASTHSILRF. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05501 534 SMART serkin_6 262 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05501 534 MobiDBLite consensus disorder prediction 17 39 - -
Seca11g05501 534 ProSiteProfiles Protein kinase domain profile. 262 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05501 534 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Seca11g05501 534 MobiDBLite consensus disorder prediction 88 108 - -
Seca11g05501 534 FunFam Mitogen-activated protein kinase 1, putative, expressed 260 528 - -
Seca11g05501 534 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 190 519 - -
Seca11g05501 534 Pfam Protein kinase domain 263 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05501 534 SUPERFAMILY Protein kinase-like (PK-like) 259 525 IPR011009 -
Seca11g05501 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Seca11g05501 534 Gene3D Transferase(Phosphotransferase) domain 1 260 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05501 Seca-Chr11 153456957 153464979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05501 12 89 MAP Kinase Kinase Kinase AT4G08500 42.697 5.25e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca11g05501 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05501 K13414 - aip:107631583 662.529