LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g05500	ATGAGCAGAGTGGACAAATTAAGAAAGAGATTTTTCAAAATGGGTAGAGGAGAAGAACCCACAAAGATGGAGATTGATCTCTCTTTGAAGATAGATACTGATGATGATGAGCAAAGAGAAGAAGAAGAAGCAGCAAAGGTAGATGATGACAAGGAAGAAATGGCACAGAATAAGGAAGAAGCCCCTGAAGCCACATCTGGTGGTGAAATAGAAGAAGATGATGCATCAGTTGTAGAAATATCTTTGCAAGATAACACAAAATCAAAAGAGCTACAGTTAAGTGCCTTACAAATGGAGATGGAGAGCATGAAAGAAGAAAACAAAGTTCTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTACAAAGGAAATTTTCAATCATCCAGGAAAATAATAAAAGAAAGGATCATCAATTTTCTCTCTCACTCCAAGATAATGCAACCACCAGCGAGGAAGGAGGGTCGAAAATTCTTGAGATCTTTAATAAAAAAATTCAAAGAGCTGATCCATCTCCACCAAACAGTACTGATGATAGTATAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAAACAAGCACAAGTACTCAAAAAGAGAAAGAGGGAAATGAAAAGGAAGATCAGAAAAAAGAGAATGAATTGGAAATTGCATCTGCAGTGGTGCAGAATAAATTTCAGCGTACACATGACTTGCCTGCAGGGATTACAACCCATGCTGCTTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCTGCTACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGTGCCTACTATCGTTGCACCGTAGCTCCAGGATGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGAACACACAACCATCCACTCCCAGTTGGTGCAACTGCAATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTTATGTTGCTAGACTCAAGCAATCCTATTTCAGATGCTTTCACCCATGCAACCCTTAATCCTTACAACACCTTCCACCCATTAAACCCACCTTCCAACATTAGAAGCATAAACCCTAATGATCCATCCCAAGGGATTGTTCTTGATCTCACCAATAATAATCTCAATGAACCTCCACGTTTTTCCAGTACTGGTAGCTCCTCCAAGATGACTGCAACAACTAGTCCTCATTTTTCTTGGATGCCAAACAAGTACCAAAGTAGCAATACTACTATTGCAATGAACAATTTTCACAACCCTAGACTACCATTGGATCATGATCATAGGAATATTTGGAAAGGAGAAGAAAGTAATAAGCCATTGGAGGACAATGTGTCTGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCGGCTATAACATCACTCATGAATAAAGAGAGCCATATAGGGACTTCTTTTGGTCCTAGGAGTGGACAAAATGGTAGCTCTAGTAGCAACAATTGGGTCCTTGAATCTCTCTCAACAAATGGTAAGCCCAATTAA	1572	0.4046	MSRVDKLRKRFFKMGRGEEPTKMEIDLSLKIDTDDDEQREEEEAAKVDDDKEEMAQNKEEAPEATSGGEIEEDDASVVEISLQDNTKSKELQLSALQMEMESMKEENKVLRKVVEQTMKDYYDLQRKFSIIQENNKRKDHQFSLSLQDNATTSEEGGSKILEIFNKKIQRADPSPPNSTDDSISESELGLSLRLQTSTSTQKEKEGNEKEDQKKENELEIASAVVQNKFQRTHDLPAGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDAFTHATLNPYNTFHPLNPPSNIRSINPNDPSQGIVLDLTNNNLNEPPRFSSTGSSSKMTATTSPHFSWMPNKYQSSNTTIAMNNFHNPRLPLDHDHRNIWKGEESNKPLEDNVSAIASDPKFRVAVAAAITSLMNKESHIGTSFGPRSGQNGSSSSNNWVLESLSTNGKPN.	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	167	216	-	-
	Seca11g05500	523	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	62	501	IPR044810	GO:0003700
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	202	216	-	-
	Seca11g05500	523	Coils	Coil	37	57	-	-
	Seca11g05500	523	Gene3D	WRKY domain	249	326	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g05500	523	ProSiteProfiles	WRKY domain profile.	259	325	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g05500	523	SMART	WRKY_cls	264	324	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g05500	523	FunFam	probable WRKY transcription factor 31	249	326	-	-
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	1	34	-	-
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	493	523	-	-
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	171	201	-	-
	Seca11g05500	523	Pfam	WRKY DNA -binding domain	265	323	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g05500	523	Coils	Coil	86	120	-	-
	Seca11g05500	523	MobiDBLite	consensus disorder prediction	1	75	-	-
	Seca11g05500	523	SUPERFAMILY	WRKY DNA-binding domain	257	325	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g05500	Seca-Chr11	153421990	153425305	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g05500	37	396	WRKY Transcription Factor Family	AT1G68150	45.628	3.08e-85	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca11g05500		WRKY	1.8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g05500	-		-	gmx:100820209	637.876