Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05460 ATGGAGAAGAAGAACATGTGGGATACATGGGCACCAGCCTTGCTAATGGTGGCTGTGCAGATCATATTTTCTGCTTGCAATGTGATCTACAAACTCGCCATAAATGATGGAATGAGCACTATTGTTATTGCAGCTTACCGTATGGCCTTCGCAGCGCTTACCATTATTCCTCTTGCTCTTATTTTTGAGAGGAAGAAGAGACCGAAGATGACTTGGAGGGTGTTTTCCATGTCAACTCTAAGTGGACTATTTGTTGGAGCTTTATTTCAAAACCTGTTCTACGGAGCACTGGTTTTGACGTCAGCAACTATTGTCTCTGCCATTTACAACCTCATTCCCACCATGACCTTTATCTTAGCTGTATCCTTTGGCTTCGAAAAATTAAATTGGGGAGCAACAACAGGAAAGGCCAAGGTTGTAGGAACTTTACTTGGACTTGTTGGAGCAATGCTGCTGACTTTTTACAAAGGAGTAGAATTTGATATTTGGCCTTTCCATATCAACCTTTTGGATCCACAACAGAATTCAAATGGACACGTGGATGATACTTCTAGTGAATTGTTGGGTGCTCTCTGTGTGGTAGTGAGCTGCCTCTGTTTTTCTCTCTGGCTAATCATTCAGGCTAAGATCAGTGTAGAATATCCATGCCCTATGTCAAGCACAGCTTTGATGTCTACATTAGGAGCAATACAGTGCTTCATTTTTGGTTTTATTGTTGAGACGGATTTGAACGAATGGAAATTGGATTGGGATATTAGGCTCCTAACCGTCACCTTTTCGGGAATTTTGGCCTCAGGATTAATGATTCTAGTCATGGCATGGTGTGTAAAGACGAAAGGGCCTTTATTTACGTCGGCTTTTAACCCTCTAATGCTTTTGATTGTGGCCGTCGCTGCTTCTATGCTGTTGGATGAAAAGTTAAATTTAGGAAGTATGCTAGGAGGAGTGTTGATTGTGTGTGGCTTGTACACGGTGCTATGGGGTAAGAACAGAGAAGCACAAAATAAGACTCTGTTAGAGCCATCAGAGATCACCGTTGATTCTGAAGTGACAAGGCCATTGTTAGATCCATGA 1074 0.4218 MEKKNMWDTWAPALLMVAVQIIFSACNVIYKLAINDGMSTIVIAAYRMAFAALTIIPLALIFERKKRPKMTWRVFSMSTLSGLFVGALFQNLFYGALVLTSATIVSAIYNLIPTMTFILAVSFGFEKLNWGATTGKAKVVGTLLGLVGAMLLTFYKGVEFDIWPFHINLLDPQQNSNGHVDDTSSELLGALCVVVSCLCFSLWLIIQAKISVEYPCPMSSTALMSTLGAIQCFIFGFIVETDLNEWKLDWDIRLLTVTFSGILASGLMILVMAWCVKTKGPLFTSAFNPLMLLIVAVAASMLLDEKLNLGSMLGGVLIVCGLYTVLWGKNREAQNKTLLEPSEITVDSEVTRPLLDP. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05460 357 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 331 - -
Seca11g05460 357 PANTHER WAT1-RELATED PROTEIN 12 333 IPR030184 GO:0016020|GO:0022857
Seca11g05460 357 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020
Seca11g05460 357 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020
Seca11g05460 357 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Seca11g05460 357 SUPERFAMILY Multidrug resistance efflux transporter EmrE 46 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05460 Seca-Chr11 152482389 152485119 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05460 5 348 Nodulin-like Gene Family AT1G68170 41.193 1.89e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05460 - - mtr:25493309 541.191