Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05437 ATGCATGCCAATGGTGTGGAGCCCAAACCAAGCGATGCGGTTGAAGAGATTGACTACTCTCAAAGGGGTCAGTGGCTTAGAGCAGCAATGCTGGGAGCCAATGATGGGTTAGTGTCAGTTACATCACTGATGATGGGTGTTGGAGCTGTGAAGGAAGACATAAACGCCATGCTTCTTGCTGGTTTTGTTGGCTTAATAGCTGGTGCTTGTAGTATGGCAATTGGAGAGTTTGTCTCTGTCTACACTCAGTACGACATTGTGATGGCTCAGATTAAAAGAGAAAGTAAAGCTAATAATAATGATGATGAAGAAGCTCAAAGGGAGAAGCTTCCAAACCCATTCCAGGCTGCAATTGCATCGGCACTTGCATTTTCTGTGGGTGCTTTGGTGCCACTGCTAGCTGCTGTTTTTATAAGGAATCACAATATAAGGATGGGTGTTGTTGCTGCTGTGGCTAGTTTGGCTTTGTTGGTGTTTGGAGGGGTTGGTGCAGTGATTGGAAAAACTCCAGTGAGGAGATCTTGTGCTGGTGAACCCAATAACAATGATTCAGTGACACTCAACAACCATGTAGTAGTTACAGTTCCAAATGGAAAAGAACATCATGAGAAGCAAACCCAAGTGACTGAAGATGATACCAACAACATTAACTATTGGCAAAGGGCTCAATGGCTTCGTGCAGCTGTGTTAGGAGCCAATGATGGGTTGGTTTCAGTTGCTTCATTGATGATGGGTGTAGGAGCTGTTAAAAGAGATGTCAAATCCATGCTACTTGCTGGTTTTGCAGGGTTAGTTGCAGGGGCTTGTGGCATGTCAATAGGAGAATTTGTTTCTGTGTACACTCAGTATGAAGTTGAGGTTGGTCAAATAAAGAGAGACATGGATATGAGAAACAAAGGAGAGAAAGAGTTGGAGTTGGAGTTGGAGAAAAGGAAATCACTGCCTAATCCATTGCAAGCTGCTATGGCATCTGCATTCTCTTTTGCTATAGGTGGTTTGGTTCCTTTACTTTCAGCATCATTCATAACAGATTATAAGATAAGGCTTGTTATGCTTGTGGCAATTGCTGGCTTGGCTTTGGTGGTCTTTGGAAGTGTGGGAGCTCAACTTGGAAAGACACCAAAGCTTAAATCTTGCATTAGGTTCCTTTTGGGGGGATGGATGGCTATGGCTATCACTTTTGGGTTAACCAAATTACTTGAGCTTAGTGGTTTGCAATTATGA 1224 0.4338 MHANGVEPKPSDAVEEIDYSQRGQWLRAAMLGANDGLVSVTSLMMGVGAVKEDINAMLLAGFVGLIAGACSMAIGEFVSVYTQYDIVMAQIKRESKANNNDDEEAQREKLPNPFQAAIASALAFSVGALVPLLAAVFIRNHNIRMGVVAAVASLALLVFGGVGAVIGKTPVRRSCAGEPNNNDSVTLNNHVVVTVPNGKEHHEKQTQVTEDDTNNINYWQRAQWLRAAVLGANDGLVSVASLMMGVGAVKRDVKSMLLAGFAGLVAGACGMSIGEFVSVYTQYEVEVGQIKRDMDMRNKGEKELELELEKRKSLPNPLQAAMASAFSFAIGGLVPLLSASFITDYKIRLVMLVAIAGLALVVFGSVGAQLGKTPKLKSCIRFLLGGWMAMAITFGLTKLLELSGLQL. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05437 407 CDD Nodulin-21 24 170 - -
Seca11g05437 407 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 201 400 IPR008217 GO:0005384|GO:0030026
Seca11g05437 407 CDD Nodulin-21 223 375 - -
Seca11g05437 407 Pfam VIT family 107 174 IPR008217 GO:0005384|GO:0030026
Seca11g05437 407 Pfam VIT family 26 107 IPR008217 GO:0005384|GO:0030026
Seca11g05437 407 Pfam VIT family 225 302 IPR008217 GO:0005384|GO:0030026
Seca11g05437 407 Pfam VIT family 303 397 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05437 Seca-Chr11 152269074 152276228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05437 210 405 Nodulin-like Gene Family AT3G43660 59.184 1.42e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05437 K22736 - gmx:100791523 285.804