Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05431 ATGCAGTTTAAAATGTCAGATGTGGAAGAGTATAGGTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAGAAGTTTGGCAAGCTTACTGAGGCAAAGGTAGTTGTTGACAAATTCTCTGGACGCTCTCGTGGGTTCGGATTTGTCACATTTGATGATAAGAAAGCAATGGAAGAAGCTATTGAAGCCATGAATGGGATGGATTTAGATGGACGGACTATTACTGTTGATAGAGCTCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCAAGAACGTGGTCGTGATCGTGGTCGTGATCGTGATCGTGACAGAGATTTCAGAGGTGGTCGAGGGTCTAATGGTGGTGAGTGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGCAAGAGGGGGAAGGTATGGTGGCAGGGAAAGTAGGTATGGTGGAAGCAGTGCTGGTGGTCACTATGGTCCAGATAGAAATGCAGATCGCTCTTCTGGTGGCCGCAACAGGGATGGTGGTAGTCATGGAGATTCGGGAAATGATCGATATTATCGTGATCGTGCTGGACCATATGAACGACGGGGATCAGGAGGCTTTCGTTGA 642 0.4673 MQFKMSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMEEAIEAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYQERGRDRGRDRDRDRDFRGGRGSNGGECFKCGKPGHFARECPSEGARGGRYGGRESRYGGSSAGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRYYRDRAGPYERRGSGGFR. 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05431 213 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Seca11g05431 213 SUPERFAMILY Retrovirus zinc finger-like domains 111 146 IPR036875 GO:0003676|GO:0008270
Seca11g05431 213 CDD RRM2_NsCP33_like 12 87 - -
Seca11g05431 213 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Seca11g05431 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Seca11g05431 213 Gene3D - 125 183 - -
Seca11g05431 213 MobiDBLite consensus disorder prediction 92 122 - -
Seca11g05431 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Seca11g05431 213 SMART rrm1_1 12 85 IPR000504 GO:0003723
Seca11g05431 213 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 210 - -
Seca11g05431 213 SUPERFAMILY RNA-binding domain, RBD 5 117 IPR035979 GO:0003676
Seca11g05431 213 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Seca11g05431 213 FunFam Glycine-rich RNA-binding protein 10 125 183 - -
Seca11g05431 213 MobiDBLite consensus disorder prediction 174 206 - -
Seca11g05431 213 Gene3D - 3 124 IPR012677 -
Seca11g05431 213 FunFam Glycine-rich RNA-binding protein RZ1A 5 124 - -
Seca11g05431 213 MobiDBLite consensus disorder prediction 79 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05431 Seca-Chr11 152143683 152149192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05431 13 88 Eukaryotic Initiation Factors Gene Family AT4G34110 40.789 8.02e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05431 - - gmx:100815224 309.686