Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05425 ATGGGAGATAACAATGTCAACCTTCCACCTGGATTTCGTTTCTATCCCACAGATGAAGAGCTTGTGGTCCATTTCCTCCATAGAAAGGCTTCCCTTTTACCTTGTCATCCAGATGTCATCCCTGATCTTGACCTCTACCCATATGATCCATGGGAGCTTCATGGTAGAGCTTTGGCAGAGGGAAACCAATGGTACTACTATAGCAGAAGGACACAAAATAGGATCACTAGCAATGGTTATTGGGTGCCAATGGGAATGGAAGAATCAATTGTTACAAGCTCAAGTAACAAGAGAGTTGGTATGAAGAAATATTATGTGTTCCATTTAGGAGAAGCACCTGATGGTAACAAAACTAATTGGATAATGCAAGAGTATAGTCTATCAGATTCTGCTTCCTCTAGCAGATCATCCAAAAAAAAAGCACAGCCAAAAAATGATCATAGTAAATGGGTGATATGTCGAGTTTATGAGCATGATGATGATCAGGATGGTGATGGAACAGAGCTCTCATGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAAGAAGTAAGCTTGCCAAATTAG 570 0.4018 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPYDPWELHGRALAEGNQWYYYSRRTQNRITSNGYWVPMGMEESIVTSSSNKRVGMKKYYVFHLGEAPDGNKTNWIMQEYSLSDSASSSRSSKKKAQPKNDHSKWVICRVYEHDDDQDGDGTELSCLDEVFLSLDDLEEVSLPN. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05425 189 FunFam NAC domain-containing protein 104 17 161 - -
Seca11g05425 189 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Seca11g05425 189 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Seca11g05425 189 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Seca11g05425 189 PANTHER NAC TRANSCRIPTION FACTOR 56 8 163 - -
Seca11g05425 189 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05425 Seca-Chr11 152059771 152061409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05425 1 162 NAC Transcription Factor Family AT1G61110 40.782 1.27e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g05425 NAM 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05425 - - gmx:100813096 355.91