Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05419 ATGGAAAATGCGATGAGCAACAGCAAGATGAAGGCTTCGAAGGTGAGGACTTCGAACGAGAACGTTTCGCCGTTGCGAATCGAGTTGGAAGATAAACGTGGACGCTATCTCCAATCAACGACGATGAGTCCAAGATTTCAACCGTACGCCGAGAACATCGACGTCGGCTCGCCGCTGGCACGCTACTTCTTCTCCGGATCTCCAATTTCCGGGAAGGTCGCTTCCTCTGGCGAGGCCTTCACTCCTCCGACGTTCGAATCCGGCAAGTACAGGTCCGCGAAAGCGTTACATTACAGCGGAAACAGTAGCTTCGGTTCTCGCAGTAGATTGTCGCTTTCTTCAATTGAGAACTTGGAGATCATGTCGCCGCCGGTTTACGGCACGCCGGTGAAGGTGGACGAGGAAGTTCTTGTGATGGATGATATTCTGGTGAGGCCAATGTCAGGAGGTAAGAACGGAAGGTCTTCATCTTCCTCCGGCCGGGGTTCTTCGTCGTCGTCGTCGTCATCGTCGAAGAGCGTGTTCAAGACGGAGCTTTGCAGAGCGTGGGAGGAATCTGGAAACTGCCGCTACAACTCCAAATGCCAGATAAGAAATTTGCCCGTTGGTAATGATTCCAGGTATGGTTGTGAAGAATGTAACCTTCAACATGTTAAGTTTGCACATGGAAAAGAAGAGCTTCATCCAAGTCATTTCTCCATGAAGAGCAAATTATCTATTAGAGCACGACCCTTCATATATAGCGGCCAAAGTAGCCGCATTGCAGCAGCTGCAGCATCTGCGCATCTAGTCACAACATCCCAACCAGCTTCACCTGAACCTCATAACACCCGTGCCAAATCCAACACTACCAATGACTGGTCACCCCTGGATGATGGCATTCAGGTTGTCCTCCCCAATGTTTCAGATAAAGCTCCCTCAAGGGAGGAAGTTAATGCACACATTTTCAATGTTCTCAATAACCCGACTACTAAAAGGAGACTACCAGTATTTGCAGCACTTTGCGAGGGGCAGTAA 1017 0.4966 MENAMSNSKMKASKVRTSNENVSPLRIELEDKRGRYLQSTTMSPRFQPYAENIDVGSPLARYFFSGSPISGKVASSGEAFTPPTFESGKYRSAKALHYSGNSSFGSRSRLSLSSIENLEIMSPPVYGTPVKVDEEVLVMDDILVRPMSGGKNGRSSSSSGRGSSSSSSSSSKSVFKTELCRAWEESGNCRYNSKCQIRNLPVGNDSRYGCEECNLQHVKFAHGKEELHPSHFSMKSKLSIRARPFIYSGQSSRIAAAAASAHLVTTSQPASPEPHNTRAKSNTTNDWSPLDDGIQVVLPNVSDKAPSREEVNAHIFNVLNNPTTKRRLPVFAALCEGQ. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05419 338 PANTHER CCCH ZINC FINGER/TIS11-RELATED 109 237 IPR045877 GO:0003729
Seca11g05419 338 MobiDBLite consensus disorder prediction 265 289 - -
Seca11g05419 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 196 IPR000571 GO:0046872
Seca11g05419 338 MobiDBLite consensus disorder prediction 1 27 - -
Seca11g05419 338 MobiDBLite consensus disorder prediction 147 171 - -
Seca11g05419 338 MobiDBLite consensus disorder prediction 150 171 - -
Seca11g05419 338 ProSiteProfiles Zinc finger C3H1-type profile. 175 196 IPR000571 GO:0046872
Seca11g05419 338 Gene3D - 166 196 - -
Seca11g05419 338 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05419 Seca-Chr11 152002744 152005047 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca11g05419 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05419 - K18753 gmx:102661448 266.544