Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05415 ATGAACTACTGCAAATGTAGATACCATATTATACTAATAGTGTGTTATTTGATTTGTAACACCATGGTTATTATTGAATCTAGTGATTTGTCAAACAACAACTTAACAGGAGACGTCCCAGTCAATGGTTCTTTTACATTACTTACTCCAGACAGTTTTAACAGTAATCCTCACTTGAATAAAAGATTCATTCCAGCTCCATTGCAACAAACTACTTCAGGTGACTTTGCTACTAGAACCATTGCTGTGGTTTTTGCATTATTGTTTGTAGCCCCTGCAGTTGCACTTGCTTGTTGGCAAATAAAGAAACCACATGATCATTTCATTGATTCTCTTGATGAGGAGGATCCTGATCCTGAACTTCACCTTAGTCAGCTCAAAAGGTTTTCACTGCATGAGCTACAAAGTGCAACAAATAACTTCAAAAATATTCTGGGTAAAGGTGGATCTGGCATGGTTTATAAAGGACACTTAGCAGATGGTTCTCTTGTAGCAGTCAAAAGACTTGAAAAAAAAGGCACCCGAGGTGGGGAACTGCAATTTAAAACTGAAGTTGAAATGATTGGCATGGCTGTACATCAAAATTTACTTCGGCTGCGTGGTTTTTGCATGACGCGCTCTGAAATGTTGCTTGTGTATCCTCTCATGATTAATGGAAGTGTAGCATCATGGTTACGAGAGCGTCCGAAATCACAACCACCACTTGACTGGCCAACACGGAAGCGTGTTGCCTTAGGAACTGCTAGGGGGCTTGCTTATTTGCATGATCATTGTCACCCGAAGATTGTTCATCGTGATGTCAAAGCTGCTAATATTTTGTTAGATGAGGAATGTAATGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTAAGGATTACAAAGATACTCATGTCACCACTGCTGTATATGGTACAATTGGGCATATAGCGCCAGAGTACGCCTCAACTGGAAAGTTTACAGAGAAGGTTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGACGGCTTTTGATCTAGCACGACTTGCTGACAATGATGATGCCAGGTTGCTTCTTTGGGTGAAAGGACTTCTGAAAGAGGAGAGGTTGGAGACATTGGTGGATGCAAATTTACAGGGCAAATATAATGAGGAGGAAGTAAAGCAGATAATCCAAGTGGCCTTGCTATGCACACAAGACTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTTGTTAGAATGCTAGAGGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATTATCCGCCAAGATTTCGACCTCAACTTCACCAAATTACTAAATTCTAATTGGATATTAGACTCAATTTCAAATGTCTCAGAAGATGAGTTGTCTTTATCAGGTCCTAGATGA 1401 0.404 MNYCKCRYHIILIVCYLICNTMVIIESSDLSNNNLTGDVPVNGSFTLLTPDSFNSNPHLNKRFIPAPLQQTTSGDFATRTIAVVFALLFVAPAVALACWQIKKPHDHFIDSLDEEDPDPELHLSQLKRFSLHELQSATNNFKNILGKGGSGMVYKGHLADGSLVAVKRLEKKGTRGGELQFKTEVEMIGMAVHQNLLRLRGFCMTRSEMLLVYPLMINGSVASWLRERPKSQPPLDWPTRKRVALGTARGLAYLHDHCHPKIVHRDVKAANILLDEECNAVVGDFGLAKLKDYKDTHVTTAVYGTIGHIAPEYASTGKFTEKVDVFGYGVMLLELITGQTAFDLARLADNDDARLLLWVKGLLKEERLETLVDANLQGKYNEEEVKQIIQVALLCTQDSPLERPKMSEVVRMLEGDGLAEKWDQWQKEEIIRQDFDLNFTKLLNSNWILDSISNVSEDELSLSGPR. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05415 466 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 416 - -
Seca11g05415 466 ProSiteProfiles Protein kinase domain profile. 139 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05415 466 SMART serkin_6 139 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05415 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Seca11g05415 466 FunFam Somatic embryogenesis receptor kinase 1 108 215 - -
Seca11g05415 466 Gene3D Transferase(Phosphotransferase) domain 1 216 433 - -
Seca11g05415 466 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Seca11g05415 466 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Seca11g05415 466 Pfam Protein kinase domain 142 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g05415 466 ProSitePatterns Protein kinases ATP-binding region signature. 145 167 IPR017441 GO:0005524
Seca11g05415 466 FunFam Somatic embryogenesis receptor-like kinase 1 216 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05415 Seca-Chr11 151919280 151924473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05415 21 466 Receptor kinase-like Gene Family AT4G33430 67.396 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca11g05415 Pkinase 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05415 K13416 - gmx:100800522 589.726