Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05412 ATGGATGCTTTATCCTTAACCTCAAGCTTAAGCATTTCCAAGCCATTTCATTGCCTTCTACTCTCAAATAAACAGCAAAGAACTTCTCAGCTGCAATTCAGTGTTTCATGCAGATCCACCACAATAAGCACCAAAGGAAATTTCTACAAAATGTTGTCTCTGAGTCCTGGAAGTGCAACAAAGGATGAGATAAAGAGGGCTTATAGATCAATGGCTCTTCAGTACCATCCTGATGTGTGTCATGATCCTTCAATGAAAGAGGAGTCAACTAGGATGTTTGTTCAGCTGAATACAGCTTATGAGACACTGTCCAATCCTGTGCTTAGAGCACAGTATGATTGTGAATTGGGTTTGAGAAACAACATGGTCAGTGTTAGTGGTGATGAGAGATGGGAAGGAGGTAGGTGGCAGGAACAAGTGATTGAATTGAAGAAAAGGTCTCGCAGACGTATGGGACAAAAAGGGGGATCATGGGGCACCAGAATGAGGACAAATAACATGAAAGACAGGAACTAA 516 0.4186 MDALSLTSSLSISKPFHCLLLSNKQQRTSQLQFSVSCRSTTISTKGNFYKMLSLSPGSATKDEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVQLNTAYETLSNPVLRAQYDCELGLRNNMVSVSGDERWEGGRWQEQVIELKKRSRRRMGQKGGSWGTRMRTNNMKDRN. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05412 171 SMART dnaj_3 46 108 IPR001623 -
Seca11g05412 171 CDD DnaJ 47 105 IPR001623 -
Seca11g05412 171 ProSitePatterns Nt-dnaJ domain signature. 93 112 IPR018253 -
Seca11g05412 171 PRINTS DnaJ domain signature 88 108 IPR001623 -
Seca11g05412 171 PRINTS DnaJ domain signature 68 83 IPR001623 -
Seca11g05412 171 PRINTS DnaJ domain signature 50 68 IPR001623 -
Seca11g05412 171 Gene3D DnaJ domain 33 131 IPR036869 -
Seca11g05412 171 Pfam DnaJ domain 47 113 IPR001623 -
Seca11g05412 171 SUPERFAMILY Chaperone J-domain 23 112 IPR036869 -
Seca11g05412 171 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 169 - -
Seca11g05412 171 MobiDBLite consensus disorder prediction 145 171 - -
Seca11g05412 171 ProSiteProfiles dnaJ domain profile. 47 116 IPR001623 -
Seca11g05412 171 FunFam Chaperone protein dnaJ 20, chloroplastic 33 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05412 Seca-Chr11 151901832 151902872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05412 39 113 C2H2 Transcription Factor Family AT1G74250 41.558 2.83e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05412 - - gmx:100811478 229.95