Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05383 ATGGATTCTGCGTTCTCTGTCACCACGACGGCGCAGATGGCGCTTTTCAGAGCGCTCAACCGCCATTTCACCGGAGCTCCTCATCGCGCGCTCCTCCGCCGCAACCTCAAATGCGTTCTTATTTCCTGCAACAGCTGCTTCCGCATTCCGTGCTCATCCGCCTCTTTTGCTTCTGCGCCCTTGTTGCCCTCTCTCCCCACCTTCCGCGCGCTGCTACTGCGTACGCCGTGCCGTCCGAGCTGCGTTTCGAGCTCCGCCGCTTCCTTTGCTTCTTCCGCCGGCGGTGGAAATGGCGGCTCTGGAGCCGGCGAAGGCGGAGGAGGCGGCGGTTCTGGCGGTGAGTCAGGAGATGCTAATCTCAAATTGGTTGGAGACGCAGCTCAGGAGCTTTCGGCTCTTTCGTCTGATGTTATCATTCTCGATGTTTCGGGAATGGTGTGCGGAGGATGTGCAGCAACTGTGAAAAGGATTCTAGAAAGTCGACCACAAGTCTCATCCGCTAGTGTAAATTTAACAACAGAGACAGCAATAGTATGGCCTGTATCTGAAGCAAAAACTACACCAAATTGGCAAAAGCAATTAGGGGAGACACTTGCAGAACATTTAACTAGCTGTGGTTTTAATTCTAGCCTTCGAGTGGCAGGTGAGGAAGCTAGCAACTGA 663 0.54 MDSAFSVTTTAQMALFRALNRHFTGAPHRALLRRNLKCVLISCNSCFRIPCSSASFASAPLLPSLPTFRALLLRTPCRPSCVSSSAASFASSAGGGNGGSGAGEGGGGGGSGGESGDANLKLVGDAAQELSALSSDVIILDVSGMVCGGCAATVKRILESRPQVSSASVNLTTETAIVWPVSEAKTTPNWQKQLGETLAEHLTSCGFNSSLRVAGEEASN. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05383 220 CDD HMA 140 207 IPR006121 GO:0046872
Seca11g05383 220 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Seca11g05383 220 MobiDBLite consensus disorder prediction 93 113 - -
Seca11g05383 220 SUPERFAMILY HMA, heavy metal-associated domain 138 184 IPR036163 GO:0046872
Seca11g05383 220 Gene3D - 137 215 - -
Seca11g05383 220 Pfam Heavy-metal-associated domain 140 207 IPR006121 GO:0046872
Seca11g05383 220 ProSiteProfiles Heavy-metal-associated domain profile. 136 203 IPR006121 GO:0046872
Seca11g05383 220 FunFam Copper-transporting ATPase PAA1, chloroplastic 136 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05383 Seca-Chr11 151316762 151319200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05383 121 214 Primary Pumps ATPases AT4G33520 70.213 1.61e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05383 K17686 - vra:106773839 275.018