Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05380 ATGAATATGAGTATCGAGAACAAGAAGCCTTGCAAAGTCAGCGAGGTTCACTACAAGGGCGTGAGGAAGAGGCCTCGAGGTAGTTATGTTGTAGAGATTATGGATCCTAATGAGAAGAGTCGTGTTTGGTTGGGCACCTTCGACGACGCTAAGGAAGCCACTAGGGCCTATGACGTTGTTGCATGA 186 0.4785 MNMSIENKKPCKVSEVHYKGVRKRPRGSYVVEIMDPNEKSRVWLGTFDDAKEATRAYDVVA. 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05380 61 CDD AP2 17 61 IPR001471 GO:0003700|GO:0006355
Seca11g05380 61 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Seca11g05380 61 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Seca11g05380 61 SMART rav1_2 17 61 IPR001471 GO:0003700|GO:0006355
Seca11g05380 61 ProSiteProfiles AP2/ERF domain profile. 17 61 IPR001471 GO:0003700|GO:0006355
Seca11g05380 61 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 59 - -
Seca11g05380 61 Gene3D AP2/ERF domain 16 61 IPR036955 GO:0003700|GO:0006355
Seca11g05380 61 SUPERFAMILY DNA-binding domain 17 60 IPR016177 GO:0003677
Seca11g05380 61 Pfam AP2 domain 17 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05380 Seca-Chr11 151280310 151280495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05380 15 61 AP2-EREBP Transcription Factor Family AT5G44210 68.085 7.36e-19 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g05380 AP2 1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05380 K09286 - gmx:100775465 85.5001