Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05379 ATGGCGGAGCGTGCTTCTTACGGATTGGGACCTCGACTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTACGCCCTGCAGAAATATGTGAAATTCTTCGCAATTATCGGATGTTTCAAATCACACCAGAACCGCCTAGCAGGCCACCAAGTGGTTCACTTTTTCTTTTTGATAGGAAGGTTTTGAGGTACTTTAGAAAAGATGGACACAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGTTGCTTGAACCGGATATGATGCATATAGTATTTGTCCACTACTTGGATGTTAAGGTTAACAAGACCAATATTGGTGCAAGTTCATTTACGGATGATGTTACATCAGATTCCCAGAAGGGAAGTTCTGTATCTTCTGGCTTTCCCACAAATTATAGTAGCGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACTAGCACTTTGACATCTTTATGTGAAGATGCTGATTCAGAGGATATTCACCAAGCAAGCTCAGGATTGCACTCTTTTTGTGATTCACAAAATATGGGGAATGGTCGGCCGATGAATAAGATTGATGCTCGTTCAAATAGTTCATATCATATGCATCCCTTCTCAGGTGATCATGGACAGTTTTCAATGTCTGGAACAGATTATATCCCATTTGTTCAGGGGGATAAATCTAGACCAAGTGATACTACTACCTATATTGAGGGCCAGAGAGCACATGGCATGGCATCCTGGGACAATGTCCTGGAACAATCTGCAGGATTGCCTAATGATCCTTCTCCTGTATCATCTACTTCCATTCCACCAAGTTCAACCGGAAACATCCTTGAACAAGAACATACTGCTCTTACTGAAGATGCAAGGGCCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTCGAAGACAATACAGGAGAATTGCCTAAATGGAGCTTTACGCAATCATTGAGTATGGAATTCGGATCTGATTATGGCACTGGTTTACTGGGAAGTGAAATTAATGCAAGTTCAGAAATTGGTCCTGACCTTTTCATGTTTAATTGCGAGCCAAAAGATCAGTCTGTGCAGCAAAACTTCTCAAAGCAGCATACCGATGCACAATCTCAGCATGCACTGAAATCTGAGCATGAAGTTCCTGGTGAAGAAAGTATCAACTATGGCTTGACCATGAGGCGTGCATTATTGGATGGAGAGGAGAGCCTGAAAAAGGTTGATAGCTTCTCTAGGTGGATTACTAAAGAACTGGCAGCGGTGGATGATCTGCATATGCAGTCTTCCCCTGGCATTTCATGGAACACAGATGAATGTGGGAACGTGATAGATGATACCTCATTGAACCTGTCCCTATCCCAAGACCAGCTGTTTGGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCTGAAATTGAGGTGTTGATTATTGGAACATTTTTTAAGAGTCAACATGAGGTGGCAACATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAAGTTCCTGCTGAGGTTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCACCTCATGAGATTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTTGCTTGTAGTGAAGTTCGGGAATTTGAATACAAAGTGGGCTTTGCTAAAAATGTAGATTTGGCAGATTTTTTTAACAGTTCAACTGAAATGCTGCTTCATTTGCAACTAGAGGAGTTACTTTCTTTAAACTCAGTGCGTCCTTCAAATGAAGCTTTTGAGGATGATATGGAGAGAAGAAACTTAATTTTTAAGCTTATTTCACTGAAAGAGGAAGAGGAATATTCAAGTAAGGAAGAGCCAACTGGAGAGATGGATATATCAAAACACAAGTTGAAGGCAGATGTGTTTCACAGGCAGCTTAAAGAGAAGTTGTACTCATGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCACATGTATTAGGTCAGGACGGGCAAGGTGTGTTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAACACCAATTATAACGGCTGGAGTTAATATCAACTTCCGCGATGTGAATGGATGGACAGCTCTACACTGGGCTGCATCCTGTGGCAGAGAGCGAACAGTTGCCATCCTTATCTCCATGGGTGCAGCTGCTGGAGCAGTGACAGATCCATCTCCAGCATTTCCTTCAGGAAGAACACCTGCAGATCTTGCTTCTAGCAACGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCACCTCGAATCACTCACAATGGATGATCTAAATAAAGATGGTAGGAAAGAAACTTCTGGAGCGAAAGCAGTGCAGACAGTTTCAGAGAGAATTGCAACACCTGTGCTTTGTGGTGATATACCTGATGCTCTTTGCCTTAAGGATTCTCTCGATGCTGTCCGTAATGCTACACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAATCATTTCAGAGGAAGCAGTTAGCTCAGTATGATGATGATGAGTTTGGATTGTCGGATCAGCAAGCTATTTCCCTTCTAGCTTCTAAGACATGCAAATCTGGACAAGGAGATGGTTTGGCCAATGCTGCTGCAATACAAATACAGAAAAAGTTTCGTGGTTGGACGAAGAGAAAAGAATTCTTGTTCATTCGTCAAAGAGTTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGAAAGAAGTATAAAACAATCATTTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGCTGGAGGCGAAAGGGCAGCGGTTTACGTGGATTTCGACAGGATGCCCTTAATAAGCTCCCCGAACAACCAAGCGATCCTGTGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGCAAGGTTCCAAAAGGCTCTTTCAAGGGTGAAATCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTAGAGGACTTCCGTCAAACCAAGCAGGCATGTAATTTGAGTTTGGTAAATTCGGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTTTTACCTATAGCATTCAATTGA 3237 0.4226 MAERASYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFQITPEPPSRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWLLEPDMMHIVFVHYLDVKVNKTNIGASSFTDDVTSDSQKGSSVSSGFPTNYSSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGLHSFCDSQNMGNGRPMNKIDARSNSSYHMHPFSGDHGQFSMSGTDYIPFVQGDKSRPSDTTTYIEGQRAHGMASWDNVLEQSAGLPNDPSPVSSTSIPPSSTGNILEQEHTALTEDARASQSLQSNWQIPFEDNTGELPKWSFTQSLSMEFGSDYGTGLLGSEINASSEIGPDLFMFNCEPKDQSVQQNFSKQHTDAQSQHALKSEHEVPGEESINYGLTMRRALLDGEESLKKVDSFSRWITKELAAVDDLHMQSSPGISWNTDECGNVIDDTSLNLSLSQDQLFGINDFSPKWAYAESEIEVLIIGTFFKSQHEVATCNWSCMFGEVEVPAEVLANGILCCQAPPHEIGRVPFYVTCSNRFACSEVREFEYKVGFAKNVDLADFFNSSTEMLLHLQLEELLSLNSVRPSNEAFEDDMERRNLIFKLISLKEEEEYSSKEEPTGEMDISKHKLKADVFHRQLKEKLYSWLLHKVTETGKGPHVLGQDGQGVLHLVAALGYDWAITPIITAGVNINFRDVNGWTALHWAASCGRERTVAILISMGAAAGAVTDPSPAFPSGRTPADLASSNGHKGISGFLAESLLTSHLESLTMDDLNKDGRKETSGAKAVQTVSERIATPVLCGDIPDALCLKDSLDAVRNATQAADRIHQVFRMQSFQRKQLAQYDDDEFGLSDQQAISLLASKTCKSGQGDGLANAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQAHVRGHQVRKKYKTIIWSVGILEKVILRWRRKGSGLRGFRQDALNKLPEQPSDPVKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKQACNLSLVNSEEAVDGVEDLIDIDMLLDDENFLPIAFN. 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05379 1078 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Seca11g05379 1078 ProSiteProfiles Ankyrin repeat region circular profile. 725 750 - -
Seca11g05379 1078 MobiDBLite consensus disorder prediction 146 187 - -
Seca11g05379 1078 SMART ANK_2a 764 793 IPR002110 GO:0005515
Seca11g05379 1078 SMART ANK_2a 725 754 IPR002110 GO:0005515
Seca11g05379 1078 Gene3D - 901 948 - -
Seca11g05379 1078 SUPERFAMILY E set domains 492 577 IPR014756 -
Seca11g05379 1078 SUPERFAMILY Ankyrin repeat 681 786 IPR036770 -
Seca11g05379 1078 MobiDBLite consensus disorder prediction 389 415 - -
Seca11g05379 1078 ProSiteProfiles Ankyrin repeat profile. 725 757 IPR002110 GO:0005515
Seca11g05379 1078 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1039 - -
Seca11g05379 1078 Pfam Ankyrin repeats (3 copies) 697 786 IPR002110 GO:0005515
Seca11g05379 1078 Gene3D - 661 795 IPR036770 -
Seca11g05379 1078 MobiDBLite consensus disorder prediction 205 235 - -
Seca11g05379 1078 Pfam IPT/TIG domain 492 577 IPR002909 -
Seca11g05379 1078 FunFam Calmodulin-binding transcription activator 2 900 948 - -
Seca11g05379 1078 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Seca11g05379 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 951 IPR027417 -
Seca11g05379 1078 ProSiteProfiles IQ motif profile. 901 930 IPR000048 GO:0005515
Seca11g05379 1078 Pfam IQ calmodulin-binding motif 926 945 IPR000048 GO:0005515
Seca11g05379 1078 Pfam IQ calmodulin-binding motif 903 921 IPR000048 GO:0005515
Seca11g05379 1078 Gene3D Immunoglobulins 485 580 IPR013783 -
Seca11g05379 1078 ProSiteProfiles IQ motif profile. 924 948 IPR000048 GO:0005515
Seca11g05379 1078 MobiDBLite consensus disorder prediction 285 307 - -
Seca11g05379 1078 SMART CG_1_2 18 136 IPR005559 GO:0003677
Seca11g05379 1078 FunFam Calmodulin-binding transcription activator 2 485 581 - -
Seca11g05379 1078 SMART iq_5 900 922 IPR000048 GO:0005515
Seca11g05379 1078 SMART iq_5 923 945 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05379 Seca-Chr11 151253759 151264347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05379 1 1059 CAMTA Transcription Factor Family AT5G64220 53.296 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Seca11g05379 Ank_2 4.7e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05379 K21596 - gmx:100795682 1765.36