Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g05375 | ATGGAGGACTATCATGTAGCGAAATTCGTCCAGCTCGAAGGGCAAGAGCTAGGACTTTTTGCTATATATGACGGACACCTGGGAGACAGTGTACCGGCATATTTACAAAAGCATCTCTTTTCTAATATTTTGAAGGAAGAGGACTTTTGGAATGATCCATTCATGTCCATTTGTAAAGCTTATGAGACAACAGATCAGGCCATTCTTTCTCACAGTCCTGATTTGGGGCGAGGAGGATCAACTGCTGTGACTGCAATTCTCATCGATAATCAGAAATTATGGGTAGCCAATGTTGGAGATTCACGGGCAGTTTTGTCAAGGGGAGGGGTGGCTGTACAGATGACTACTGATCATGAACCCAATACTGAACGGGGCAGCATTGAGAACAGAGGTGGCTTTGTCTCAAATATGCCAGGTTCTTCAATTAACCCTGAGCAATTTCTTTATTTGTGGGTTATATCAGGAGATGTTGCAAGAGTGAATGGGCAGCTTGCGGTTTCTCGAGCATTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTATGCTGATATTGACCCAGATATTGAGCTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGCAAATCAAGAAGCTGTTGATATTGCAAGAAGGATAAAGGATCCACAAAAGGCAGCGAAACAACTACTTACTGAGGCATTGAACAGAGAGAGTAAAGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGCATGA | 759 | 0.4256 | MEDYHVAKFVQLEGQELGLFAIYDGHLGDSVPAYLQKHLFSNILKEEDFWNDPFMSICKAYETTDQAILSHSPDLGRGGSTAVTAILIDNQKLWVANVGDSRAVLSRGGVAVQMTTDHEPNTERGSIENRGGFVSNMPGSSINPEQFLYLWVISGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADIDPDIELLILASDGLWKVMANQEAVDIARRIKDPQKAAKQLLTEALNRESKDDISCIVVRFKA. | 253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g05375 | 252 | PANTHER | PROTEIN PHOSPHATASE | 1 | 250 | IPR015655 | GO:0004722|GO:0006470 | |
| Seca11g05375 | 252 | Pfam | Protein phosphatase 2C | 1 | 136 | IPR001932 | - | |
| Seca11g05375 | 252 | Pfam | Protein phosphatase 2C | 151 | 243 | IPR001932 | - | |
| Seca11g05375 | 252 | SUPERFAMILY | PP2C-like | 1 | 251 | IPR036457 | - | |
| Seca11g05375 | 252 | CDD | PP2Cc | 1 | 250 | IPR001932 | - | |
| Seca11g05375 | 252 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 250 | IPR001932 | - | |
| Seca11g05375 | 252 | SMART | PP2C_4 | 1 | 248 | IPR001932 | - | |
| Seca11g05375 | 252 | Gene3D | - | 1 | 252 | IPR036457 | - | |
| Seca11g05375 | 252 | FunFam | Probable protein phosphatase 2C 39 | 1 | 251 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g05375 | Seca-Chr11 | 151214761 | 151218514 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca11g05375 | 1 | 251 | PP2C-type Phosphatase Gene Family | AT1G22280 | 69.261 | 7.43e-128 | 362 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g05375 | K17506 | - | gmx:100776795 | 433.721 |