Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05370 ATGACTCCTGATGACATACGAAGCATGAAGTTTGCTAGTGAAGAGCATGGTGGTATATTTTATCAAGCTTACACAAAGCGTCATGGTTTTGTTGTTAGGAAAGATGAAGTAAGTCATGATTTTAAGGGAAATGTTATCATGCGTCAGTTTGTTTGCAACAAAGAGGGGACTAGGAGCAAAAAAACATTTACTAAGCTACGAATTCGCTTAGATTATAAGACATCTAAATGGAAGGTGGTTTCTTTTGTGGAGACTCATAATCAAGAGCTTACCCCTGCTACATTCGTGCACCTAATGCCTGCTTATAGAGGCTTGAATGAAGCTGATAAAGCTCAAGTAGATAGGTTGCACGCATATGGTGTTAGAACGTGTCACATAATGGGGTACATGCTAGATCAAAAAGGGGGATATGCTTCCCTTGGATTTTGTAGAAAGGACTTGTATAATTATATTGAACGACAGAAGCTTGAAAAGATTAAAGATGGGGATGCACAGGTTGCCTTATGCTATATACATGCAAAGGCAAACAATGATCCCACGCTTCGGTCGAGTTTCGTTGCTTTAGAGGATGGTACTTTGAAGCATTTGTTTTGGGCTGATGGAGGTAGTAGGGCTGATTATTACTACTTTGCGGGATGTTTTGGCATTTGA 651 0.3978 MTPDDIRSMKFASEEHGGIFYQAYTKRHGFVVRKDEVSHDFKGNVIMRQFVCNKEGTRSKKTFTKLRIRLDYKTSKWKVVSFVETHNQELTPATFVHLMPAYRGLNEADKAQVDRLHAYGVRTCHIMGYMLDQKGGYASLGFCRKDLYNYIERQKLEKIKDGDAQVALCYIHAKANNDPTLRSSFVALEDGTLKHLFWADGGSRADYYYFAGCFGI. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05370 216 PANTHER OS01G0519700 PROTEIN 8 212 - -
Seca11g05370 216 Pfam FAR1 DNA-binding domain 20 91 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05370 Seca-Chr11 151138043 151138748 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g05370 FAR1 2e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05370 - - ccaj:109792835 245.358