Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05356 ATGGGAGGTCATCAGCTAGAAAAGGGTGAGATTACTGTGACATGGGAGAATTTGGAGGCAACAGTTACAAATGGAAAGAATAGAAAAGTAATTCTGCATGGACTCACAGGTTATGCGCAGCCAGGGAAGCTTTTGGCTATAATGGGTCCTTCAGGCTGTGGCAAATCCACACTTCTTGATGCTTTAGCAGGAAGATTGAGATCAAACATAAAGCAATCAGGGAAGATCCTAATCAATGGCCACAAACAGGAACTGGCTTATGGAACATCAGGCTATGTAACACAAGATGATGCTATGCTATCAACTTTAACAGCTGGGGAAACTTTATACTACTCAGCTCAGCTCCAATTTCCAGATTCTATGACCATAACAGAGAAGAAAGAACAAGCAGACATCATACTCAGAGAAATGGGTCTGCAAGATGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGCCTAAGTGGGGGGCAAAAGAGGAGACTCAGCATTTGCATTGAGATTCTAACACGCCCCAGACTTCTATTCCTTGATGAACCAACTAGTGGCCTTGATAGTGCTGCTTCCTATTATGTTATGAGTAGAATTGCAAGTCTAAATCTAAGGGACAGCATTAGAAGGACCATTGTTGTATCCATTCATCAACCAAGCAGTGAAGTTTTTCAACTTTTCCATGACCTCTGTCTTCTGTCTTCAGGTGAAACAGTATATTTTGGTCCTGCCCCTGATGCAAATCAGTTTTTTGCTACAAATGGTTTTCCTTGTCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATCAACAAAGATTTCGAACAGGATGCTGAAGAAGGCTTTGGTAAACGAGTAACTACTGAAGAAGCAATTGACATACTTGTAAAATCTTATAAGTCGTCTGAAATCAGAAATCAAGTTCGGAATGAAGTGGCAAAAATAAGTGAAAGTGTAAGTTTCAAATTATAA 972 0.4074 MGGHQLEKGEITVTWENLEATVTNGKNRKVILHGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLRSNIKQSGKILINGHKQELAYGTSGYVTQDDAMLSTLTAGETLYYSAQLQFPDSMTITEKKEQADIILREMGLQDAINTRVGGWGSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIASLNLRDSIRRTIVVSIHQPSSEVFQLFHDLCLLSSGETVYFGPAPDANQFFATNGFPCPTLHNPSDHYLRIINKDFEQDAEEGFGKRVTTEEAIDILVKSYKSSEIRNQVRNEVAKISESVSFKL. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05356 323 CDD ABCG_EPDR 11 240 - -
Seca11g05356 323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 249 IPR027417 -
Seca11g05356 323 Pfam ABC-2 type transporter 215 282 IPR043926 GO:0140359
Seca11g05356 323 ProSitePatterns ABC transporters family signature. 155 169 IPR017871 GO:0005524|GO:0016887
Seca11g05356 323 SMART AAA_5 41 230 IPR003593 GO:0016887
Seca11g05356 323 Gene3D - 11 320 IPR027417 -
Seca11g05356 323 Pfam ABC transporter 33 183 IPR003439 GO:0005524
Seca11g05356 323 FunFam ABC transporter G family member 11 11 298 - -
Seca11g05356 323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 13 258 IPR003439 GO:0005524
Seca11g05356 323 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 7 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05356 Seca-Chr11 150781049 150782858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05356 31 219 Calmodulin-binding Proteins AT2G36910 31.633 4.16e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05356 K05681 - gmx:100790102 531.561