Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g05354 ATGAACCACCCTGGCCAGATTGGAAATGGTTATGCTCCTGTACTTGACTGCCACACATCTCACATTGTTGTCAAGTTTGCTGAACTTGTGACCAAGATTGACAAACGATCTGGTAAGGAGCTTGAGAAGGAGCCCACATTCTTGAAAAATGGAGATGCAGTTTTTGTCAAGATGATTCCCACCAAGCCCATGGTGGTTGAAACTTTCTCTGAGTATCCTCCTCTTGGTCGATTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTGGGAGTCATCAAGAATGTGAAGAAGAAGGACCCTACCGGAGCCAAGGTCACTAAGGCTGCACAGAAAAAGAAGCAAATGCAACAGCTGTTCCTATTGAATCTTGTTTCTGGTGCTTCAAGAATCATTGGAGTTGACTTAGTTTCCAGCCGATTTGAACTATCTAAAAAGTTTGGGGTTAATGAGTTTGTCAACCCAAAAGATCATGACAAACATGAACAGTAG 489 0.4356 MNHPGQIGNGYAPVLDCHTSHIVVKFAELVTKIDKRSGKELEKEPTFLKNGDAVFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVKKKDPTGAKVTKAAQKKKQMQQLFLLNLVSGASRIIGVDLVSSRFELSKKFGVNEFVNPKDHDKHEQ. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g05354 162 Pfam Elongation factor Tu C-terminal domain 4 95 IPR004160 -
Seca11g05354 162 Gene3D - 118 162 - -
Seca11g05354 162 CDD EF1_alpha_III 1 92 - -
Seca11g05354 162 PANTHER ELONGATION FACTOR 1 ALPHA 1 115 - -
Seca11g05354 162 Gene3D Translation factors 1 96 - -
Seca11g05354 162 FunFam Elongation factor 1-alpha 1 96 - -
Seca11g05354 162 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1 96 IPR009001 -
Seca11g05354 162 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 123 160 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g05354 Seca-Chr11 150689733 150690221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g05354 1 106 Eukaryotic Initiation Factors Gene Family AT1G07930 88.679 5.11e-65 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g05354 K03231 - atri:130801458 201.06